RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 HOXB5P09067 269 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 RPA2P15927 270 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 KIR2DL1P43626 348 aaPredicted RBP13.04□□□□□ -0.32
VPS35-210ENST00000568784 OR3A2P47893 321 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 POU3F1Q03052 451 aaPredicted RBP13.04□□□□□ -0.32
VPS35-210ENST00000568784 EGR4Q05215 589 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ELOCQ15369 112 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 GUCA2BQ16661 112 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 NUP54Q7Z3B4 507 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ZNF595Q8IYB9 648 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 LMX1AQ8TE12 382 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SMIM3Q9BZL3 60 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SLC25A32Q9H2D1 315 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 GAREM1Q9H706 876 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 FAM96BQ9Y3D0 163 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 TNFSF14O43557 240 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 HPP00738 406 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 HCKP08631 526 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ZNF806P0C7X5 589 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 CBR1P16152 277 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ZNF20P17024 532 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 RORAP35398 523 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SERPINF1P36955 418 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 AKR1C3P42330 323 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SCRN3Q0VDG4 424 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 RBM39Q14498 530 aaKnown RBP13.04□□□□□ -0.32
VPS35-210ENST00000568784 SLC43A2Q8N370 569 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SEMA6CQ9H3T2 930 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 IGHV3-20A0A0C4DH32 117 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 TRBV5-5A0A0J9YX44 114 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SYT7O43581 403 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 AQP8O94778 261 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 FCARP24071 287 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SLC25A1P53007 311 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ZNF117Q03924 483 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 LCN10Q6JVE6 187 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ST6GALNAC5Q9BVH7 336 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 TPSD1Q9BZJ3 242 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 DNTTIP1Q9H147 329 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 EXOSC3Q9NQT5 275 aaKnown RBP13.04□□□□□ -0.32
VPS35-210ENST00000568784 TRAV14DV4A0A0A6YYC5 116 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 PRSS37A4D1T9 235 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 BET1O15155 118 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 GLULP15104 373 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 ITGA3P26006 1051 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 VWA2Q5GFL6 755 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 NKAPLQ5M9Q1 402 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 MANEAQ5SRI9 462 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 EEF1A1P5Q5VTE0 462 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 RTL10Q7L3V2 364 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 BIVMQ86UB2 503 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.03□□□□□ -0.32
VPS35-210ENST00000568784 PHYHO14832 338 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 CSF2RBP32927 897 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 CD96P40200 585 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 GPR3P46089 330 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 EGR3Q06889 387 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 PAN3Q58A45 887 aaKnown RBP13.03□□□□□ -0.32
VPS35-210ENST00000568784 ACOT7LQ6ZUV0 252 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 FAM122BQ7Z309 247 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 ZSCAN1Q8NBB4 408 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 GPX8Q8TED1 209 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 PMM1Q92871 262 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 PRRT1Q99946 306 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 OR52A1Q9UKL2 312 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 METTL12A8MUP2 240 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 H0YIG0 161 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 ABHD16AO95870 558 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 HLA-DOBP13765 273 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 PGCP20142 388 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 CD1CP29017 333 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 MPGP29372 298 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 TDGQ13569 410 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 OR5M8Q8NGP6 311 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 ASB5Q8WWX0 329 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 ROBO4Q8WZ75 1007 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 COPS7AQ9UBW8 275 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 PIAS3Q9Y6X2 628 aa13.03□□□□□ -0.32
VPS35-210ENST00000568784 NUP210Q8TEM1 1887 aaPredicted RBP13.02□□□□□ -0.32
VPS35-210ENST00000568784 SHISA8B8ZZ34 492 aa13.02□□□□□ -0.32
VPS35-210ENST00000568784 SDCBPO00560 298 aaPredicted RBP13.02□□□□□ -0.32
VPS35-210ENST00000568784 EMP2P54851 167 aa13.02□□□□□ -0.32
VPS35-210ENST00000568784 RPL27P61353 136 aaKnown RBP13.02□□□□□ -0.32
VPS35-210ENST00000568784 ADAD2Q8NCV1 583 aaKnown RBP13.02□□□□□ -0.32
VPS35-210ENST00000568784 OR4D6Q8NGJ1 314 aa13.02□□□□□ -0.32
VPS35-210ENST00000568784 GAS2L1Q99501 681 aaPredicted RBP13.02□□□□□ -0.32
VPS35-210ENST00000568784 KLK13Q9UKR3 277 aa13.02□□□□□ -0.32
VPS35-210ENST00000568784 VSIG4Q9Y279 399 aa13.02□□□□□ -0.32
VPS35-210ENST00000568784 SPEGQ15772 3267 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 TMED7-TICAM2A0A0A6YYA0 188 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 A0A1W2PQF6 199 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 BCL2L11O43521 198 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 FOXS1O43638 330 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 NME2P22392 152 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 TFAP2EQ6VUC0 442 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 LINC00114Q6XXX2 140 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 SVBPQ8N300 66 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 OR4K17Q8NGC6 315 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 STOML3Q8TAV4 291 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 ZNF524Q96C55 264 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms