RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 F5H0A9 414 aaPredicted RBP12.57□□□□□ -0.4
CLN3-228ENST00000567804 TRAPPC2LH3BP13 241 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 NME4O00746 187 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 SGCEO43556 437 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 HKR1P10072 659 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 ZNF12P17014 697 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 GPR4P46093 362 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 SLC6A9P48067 706 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 NUDT2P50583 147 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 SEC61A1P61619 476 aaKnown RBP12.57□□□□□ -0.4
CLN3-228ENST00000567804 BTG1P62324 171 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 ZNF154Q13106 437 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 MESTQ5EB52 335 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 ARMCX4Q5H9R4 360 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 KLF17Q5JT82 389 aaPredicted RBP12.57□□□□□ -0.4
CLN3-228ENST00000567804 VASH1Q7L8A9 365 aaPredicted RBP12.57□□□□□ -0.4
CLN3-228ENST00000567804 LRRC28Q86X40 367 aaPredicted RBP12.57□□□□□ -0.4
CLN3-228ENST00000567804 RNF113BQ8IZP6 322 aaKnown RBP12.57□□□□□ -0.4
CLN3-228ENST00000567804 SIGLECL1Q8N7X8 197 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 ITLN1Q8WWA0 313 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 ACOT11Q8WXI4 607 aaPredicted RBP12.57□□□□□ -0.4
CLN3-228ENST00000567804 CMBLQ96DG6 245 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 Q96M85 177 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 GRHPRQ9UBQ7 328 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 IL19Q9UHD0 177 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 NUP50Q9UKX7 468 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 STARD10Q9Y365 291 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 AUP1Q9Y679 476 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 TEX13CA0A0J9YWL9 993 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 CDC42EP2O14613 210 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 AHCYL1O43865 530 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 CD14P08571 375 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 CTLA4P16410 223 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 ZNF26P17031 533 aaPredicted RBP12.56□□□□□ -0.4
CLN3-228ENST00000567804 RPL4P36578 427 aaKnown RBP12.56□□□□□ -0.4
CLN3-228ENST00000567804 ERFP50548 548 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 SLC7A2P52569 658 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 FOXL1Q12952 345 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 AQP6Q13520 282 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 ZMYND11Q15326 602 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 RBMS3Q6XE24 437 aaKnown RBP12.56□□□□□ -0.4
CLN3-228ENST00000567804 TMPRSS11FQ6ZWK6 438 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 MBOAT2Q6ZWT7 520 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 DOK3Q7L591 496 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 FAM122BQ7Z309 247 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 HAVCR1Q96D42 359 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 ZNF570Q96NI8 536 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 EFCAB1Q9HAE3 211 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 PLEK2Q9NYT0 353 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 ZNF69Q9UC07 566 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 PPP1R3CQ9UQK1 317 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 ARL2BPQ9Y2Y0 163 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 PCDHGB1Q9Y5G3 927 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 INSIG2Q9Y5U4 225 aa12.56□□□□□ -0.4
CLN3-228ENST00000567804 PRSS37A4D1T9 235 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 DNAJC9-AS1A6NH13 148 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 XKRYO14609 159 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 SURF4O15260 269 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 PRTN3P24158 256 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 LIPEQ05469 1076 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 ZBED5Q49AG3 693 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 IFI44LQ53G44 452 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 TBPL2Q6SJ96 375 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 HACD2Q6Y1H2 254 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 ZNF730Q6ZMV8 503 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 SLC7A6Q92536 515 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 C1orf147Q96MC9 270 aaPredicted RBP12.55□□□□□ -0.4
CLN3-228ENST00000567804 COG8Q96MW5 612 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 OR2V2Q96R30 315 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 CCT8L2Q96SF2 557 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 GPA33Q99795 319 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 MRI1Q9BV20 369 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 ZNF747Q9BV97 191 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 ZMAT3Q9HA38 289 aaKnown RBP12.55□□□□□ -0.4
CLN3-228ENST00000567804 ARL8BQ9NVJ2 186 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 AP3M1Q9Y2T2 418 aa12.55□□□□□ -0.4
CLN3-228ENST00000567804 CMYA5Q8N3K9 4069 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 OR6C6A6NF89 314 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 TMEM178BH3BS89 294 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 CXCR6O00574 342 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 ZNF682O95780 498 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 PRDX6P30041 224 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 MDH2P40926 338 aaKnown RBP12.54□□□□□ -0.4
CLN3-228ENST00000567804 GSK3BP49841 420 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 MMP16P51512 607 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 KRR1Q13601 381 aaKnown RBP12.54□□□□□ -0.4
CLN3-228ENST00000567804 ESCO2Q56NI9 601 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 OTPQ5XKR4 325 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 C1orf94Q6P1W5 598 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 CBLL1Q75N03 491 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 ARPINQ7Z6K5 226 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 BCL6BQ8N143 479 aaPredicted RBP12.54□□□□□ -0.4
CLN3-228ENST00000567804 MUC20Q8N307 709 aaPredicted RBP12.54□□□□□ -0.4
CLN3-228ENST00000567804 PTP4A1Q93096 173 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 RASD2Q96D21 266 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 CMTM5Q96DZ9 223 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 ZNF48Q96MX3 618 aaPredicted RBP12.54□□□□□ -0.4
CLN3-228ENST00000567804 DUX5Q96PT3 197 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 HOPXQ9BPY8 73 aaPredicted RBP12.54□□□□□ -0.4
CLN3-228ENST00000567804 C1QTNF5Q9BXJ0 243 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms