RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 DNPH1O43598 174 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 TLX3O43711 291 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 EFNA2O43921 213 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 SLC22A5O76082 557 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 KDM4BO94953 1096 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 MPZL1O95297 269 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PMS2P2O95744 297 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 CER1O95813 267 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 IFNA7P01567 189 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 TTRP02766 147 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ITGB2P05107 769 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 KLK3P07288 261 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 DCNP07585 359 aaKnown RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 ACSM4P0C7M7 580 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 TMIGD3P0DMS9 266 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 GTF2F2P13984 249 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ZNF17P17021 662 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 TBPP20226 339 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 CCL1P22362 96 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ZNF133P52736 654 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 EFNB2P52799 333 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 SNRPD2P62316 118 aaKnown RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 GRB2P62993 217 aaKnown RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 FMODQ06828 376 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PMPCAQ10713 525 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PLA2G7Q13093 441 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 MEF2DQ14814 521 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 POU4F3Q15319 338 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 HIST3H3Q16695 136 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ODF4Q2M2E3 257 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 HLA-BQ31612 363 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 THOC7Q6I9Y2 204 aaKnown RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR5M10Q6IEU7 315 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 STEAP1BQ6NZ63 245 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ZNF529Q6P280 563 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 MTFR2Q6P444 385 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 LRFN4Q6PJG9 635 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 TEX261Q6UWH6 196 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 FOXL2NBQ6ZUU3 175 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 UTS2BQ765I0 119 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 SLC36A1Q7Z2H8 476 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR2W3Q7Z3T1 314 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 MDGA2Q7Z553 956 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 GABRG1Q8N1C3 465 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ARMC10Q8N2F6 343 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 GTPBP8Q8N3Z3 284 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 SLC22A24Q8N4F4 322 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 BMPERQ8N8U9 685 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PLPP7Q8NBV4 271 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 AGBL5Q8NDL9 886 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR1M1Q8NGA1 313 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR11H4Q8NGC9 324 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR8H1Q8NGG4 311 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR2T35Q8NGX2 323 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR2AJ1Q8NGZ0 328 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PMEPA1Q969W9 287 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 FAM46BQ96A09 425 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 IMMP1LQ96LU5 166 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 FOXN4Q96NZ1 517 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 NPAS1Q99742 590 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 SEC22CQ9BRL7 303 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ANGPTL4Q9BY76 406 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PBOV1Q9GZY1 135 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 METTL17Q9H7H0 456 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 HEXA-AS1Q9H8Q6 139 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 APMAPQ9HDC9 416 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 TMEM138Q9NPI0 162 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 MED29Q9NX70 200 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 SLC2A8Q9NY64 477 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PIPOXQ9P0Z9 390 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ZNF69Q9UC07 566 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 SLC23A1Q9UHI7 598 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 FLVCR2Q9UPI3 526 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 PCDHGA5Q9Y5G8 931 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 AUP1Q9Y679 476 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 CHCHD2Q9Y6H1 151 aaPredicted RBP5.57□□□□□ -1.52
CLN3-223ENST00000566472 U3KQ87 197 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 IGHV1-45A0A0A0MS14 117 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 A0A1W2PPL8 197 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 C2orf72A6NCS6 295 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 OR6C65A6NJZ3 312 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 A6NL46 340 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ZNF726A6NNF4 738 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 HMSDA8MTL9 139 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 DISC1C4P0D8 188 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 H3BML4 177 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 H3BUI4 141 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 PYCARD-AS1I3L0S3 204 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 M0R233 179 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 AGRPO00253 132 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 P2RY10O00398 339 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 SYT7O43581 403 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 EIF1BO60739 113 aaKnown RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 NOS1APO75052 506 aaPredicted RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 OR2J2O76002 312 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 VAMP5O95183 116 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 RAB3DO95716 219 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 UBBP0CG47 229 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 VSIG10L2P0DP72 767 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms