RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KCNIP1Q9NZI2 227 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 REV1Q9UBZ9 1251 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ICAM5Q9UMF0 924 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 GBF1Q92538 1859 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 PLPP3O14495 311 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 RBBP9O75884 186 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 AMY2BP19961 511 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 PTPN6P29350 595 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ACAA2P42765 397 aaKnown RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 ZFP36L2P47974 494 aaKnown RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 AP3S2P59780 193 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 CNN3Q15417 329 aaKnown RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 OR8G1Q15617 311 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 OR2T2Q6IF00 324 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 RPL22L1Q6P5R6 122 aaKnown RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 ACBD4Q8NC06 268 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ZNF416Q9BWM5 594 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ANGPTL4Q9BY76 406 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 EGLN1Q9GZT9 426 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 CNOT2Q9NZN8 540 aaKnown RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 PSORS1C1Q9UIG5 152 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 KCNMB2Q9Y691 235 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 A0A1W2PQD3 144 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ZAR1LA6NP61 321 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 H3BMH7 237 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 BHLHE40O14503 412 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 CNOT4O95628 575 aaKnown RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 ARR3P36575 388 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ISL1P61371 349 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 MGAT2Q10469 447 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 SNTB2Q13425 540 aaKnown RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 ALKBH1Q13686 389 aaKnown RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 TRAM1Q15629 374 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 CNPY1Q3B7I2 92 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 NOXO1Q8NFA2 376 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 HAS2Q92819 552 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 NIPAL2Q9H841 368 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 NOX4Q9NPH5 578 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 C14orf119Q9NWQ9 140 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 PCDHGB6Q9Y5F9 930 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 SLC16A6O15403 523 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 WDR1O75083 606 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 OPRM1P35372 400 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ZNF136P52737 540 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ART1P52961 327 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 FUT5Q11128 374 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 BEND4Q6ZU67 534 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ZNF584Q8IVC4 421 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 OR13C5Q8NGS8 318 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 OPN3Q9H1Y3 402 aaPredicted RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 ERVK13-1Q9NX77 482 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 DLL3Q9NYJ7 618 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ERRFI1Q9UJM3 462 aaPredicted RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 PMF1-BGLAPU3KQ54 211 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 V9GY05 133 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 AQP8O94778 261 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 HRGP04196 525 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ADH6P28332 368 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 DUSP1P28562 367 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 ETV1P50549 477 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 RPS25P62851 125 aaKnown RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 PITPNAQ00169 270 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 RGS7BPQ6MZT1 257 aaPredicted RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 TMEM108Q6UXF1 575 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 AKAP1Q92667 903 aaKnown RBP eCLIP8.24□□□□□ -1.091e-6■□□□□ 10.4
VPS39-205ENST00000562258 WDR12Q9GZL7 423 aaKnown RBP8.24□□□□□ -1.09
VPS39-205ENST00000562258 SLCO1C1Q9NYB5 712 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 CSAG2Q9Y5P2 127 aa8.24□□□□□ -1.09
VPS39-205ENST00000562258 LOC107986453A0A1B0GWG9 222 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 PEX14O75381 377 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 PSMF1Q92530 271 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 TSPAN32Q96QS1 320 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 CHIAQ9BZP6 476 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 SELENOIQ9C0D9 397 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 NAA50Q9GZZ1 169 aaKnown RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 MSRB2Q9Y3D2 182 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 HIVEP3Q5T1R4 2406 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 IGKV3D-11A0A0A0MRZ8 115 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 FADS1O60427 444 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 ZNF205O95201 554 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 FAHP16930 419 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 ZNF121P58317 390 aaPredicted RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 RPS23P62266 143 aaKnown RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 GRB2P62993 217 aaKnown RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 PLEKHN1Q494U1 663 aaPredicted RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 EMC4Q5J8M3 183 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 HAGHLQ6PII5 290 aaPredicted RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 FAM26EQ8N5C1 309 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 SEMA6DQ8NFY4 1073 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 OR8D4Q8NGM9 314 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 CCL17Q92583 94 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 SLC30A2Q9BRI3 323 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 SLC26A1Q9H2B4 701 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 EXOSC3Q9NQT5 275 aaKnown RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 FBXO9Q9UK97 447 aaPredicted RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 SLC22A23A1A5C7 686 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 C16orf97H3BN30 126 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 GABRPO00591 440 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 ZNF658BQ4V348 819 aaPredicted RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 KRTCAP3Q53RY4 240 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms