RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CBR4Q8N4T8 237 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CERS5Q8N5B7 392 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 FAM71E2Q8N5Q1 922 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 OR4M2Q8NGB6 313 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 OR9A1PQ8NGU1 263 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 OR8K3Q8NH51 312 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 OR52N1Q8NH53 320 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CDC26Q8NHZ8 85 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 MCFD2Q8NI22 146 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 PHOSPHO2Q8TCD6 241 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CANT1Q8WVQ1 401 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 FCGR1BQ92637 280 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 SLC38A4Q969I6 547 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RCN3Q96D15 328 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ZHX1-C8orf76Q96EF9 292 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 PPP3R2Q96LZ3 170 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RNF145Q96MT1 663 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 KLF6Q99612 283 aaPredicted RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 LXNQ9BS40 222 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF416Q9BWM5 594 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 UGT2B28Q9BY64 529 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 UCK2Q9BZX2 261 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ILKAPQ9H0C8 392 aaPredicted RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 DUSP21Q9H596 190 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 KAT8Q9H7Z6 458 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 MRPL47Q9HD33 250 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CCNB1IP1Q9NPC3 277 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 PNO1Q9NRX1 252 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ZCCHC3Q9NUD5 404 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RAB20Q9NX57 234 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 TAS2R9Q9NYW1 312 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 USE1Q9NZ43 259 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 BFARQ9NZS9 450 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 EXTL2Q9UBQ6 330 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 MARCOQ9UEW3 520 aaPredicted RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 WARS2Q9UGM6 360 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 KIF25Q9UIL4 384 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ANAPC7Q9UJX3 599 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 ADAM28Q9UKQ2 775 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 DNPEPQ9ULA0 475 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 RAB23Q9ULC3 237 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 STAP1Q9ULZ2 295 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 PIN4Q9Y237 131 aaKnown RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 GINS2Q9Y248 185 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 FOXA2Q9Y261 457 aaPredicted RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 COQ4Q9Y3A0 265 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 DUOX1Q9NRD9 1551 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 CCDC88AQ3V6T2 1871 aa2.26□□□□□ -2.05
VPS13C-208ENST00000559119 SIPA1L3O60292 1781 aaPredicted RBP2.26□□□□□ -2.05
VPS13C-208ENST00000559119 TOGARAM1Q9Y4F4 1720 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TMEM2Q9UHN6 1383 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CICQ96RK0 1608 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 A0A0A6YYC8 382 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 DHRS12A0PJE2 317 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PRORSD1PA6NEY8 169 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 OR6C70A6NIJ9 312 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ARGFXA6NJG6 315 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PCP4L1A6NKN8 68 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 HACD1B0YJ81 288 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 I3L1I5 382 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 I3L521 148 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 UBXN8O00124 270 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 WRBO00258 174 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CHEK1O14757 476 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 VEGFDO43915 354 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 NPIPB7O75200 414 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PIAS1O75925 651 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CABYRO75952 493 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 SRP72O76094 671 aaKnown RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TDP2O95551 362 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 MT-ATP6P00846 226 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 IFNA7P01567 189 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CDK1P06493 297 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 HTR1AP08908 422 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RBP1P09455 135 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 OR8U8P0C7N1 319 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 THRBP10828 461 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 MLNP12872 115 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 HLA-EP13747 358 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ETS1P14921 441 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF250P15622 560 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 FCARP24071 287 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PSMA2P25787 234 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 NTSP30990 170 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 SHMT2P34897 504 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RPL22P35268 128 aaKnown RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 MAGEA3P43357 314 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 MRPL19P49406 292 aaKnown RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CASP4P49662 377 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RPL14P50914 215 aaKnown RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RAB13P51153 203 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ATXN3P54252 364 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PKNOX1P55347 436 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 MYL6P60660 151 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PSMC5P62195 406 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 EMX1Q04741 257 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 SPP2Q13103 211 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 GGTLC2Q14390 218 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 GK2Q14410 553 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 LRRC26Q2I0M4 334 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms