RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RBP7Q96R05 134 aa6.5□□□□□ -1.37
VPS13C-206ENST00000558338 METTL7AQ9H8H3 244 aa6.5□□□□□ -1.37
VPS13C-206ENST00000558338 PRMT8Q9NR22 394 aaPredicted RBP6.5□□□□□ -1.37
VPS13C-206ENST00000558338 KLHL13Q9P2N7 655 aa6.5□□□□□ -1.37
VPS13C-206ENST00000558338 ING1Q9UK53 422 aaPredicted RBP6.5□□□□□ -1.37
VPS13C-206ENST00000558338 SLC22A13Q9Y226 551 aa6.5□□□□□ -1.37
VPS13C-206ENST00000558338 RPH3AQ9Y2J0 694 aaPredicted RBP6.5□□□□□ -1.37
VPS13C-206ENST00000558338 WIF1Q9Y5W5 379 aa6.5□□□□□ -1.37
VPS13C-206ENST00000558338 FER1L5A0AVI2 2057 aa6.5□□□□□ -1.37
VPS13C-206ENST00000558338 TRAV18A0A075B6X5 111 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 IGHV3-20A0A0C4DH32 117 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 A0A1W2PPC1 479 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 LOC390937A0A1W2PQ73 354 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 CIB4A0PJX0 185 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TP53I11O14683 189 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TSC22D2O75157 780 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 RGS11O94810 467 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 PNPP00491 289 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 HPXP02790 462 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ERCC1P07992 297 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 MELTFP08582 738 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 GTF2F2P13984 249 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ADH6P28332 368 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 HOXA6P31267 233 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 EIF1P41567 113 aaKnown RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 MMP16P51512 607 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 RPS15P62841 145 aaKnown RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ETFDHQ16134 617 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 PLPPR5Q32ZL2 321 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 C1orf100Q5SVJ3 147 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 THEM4Q5T1C6 240 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ZNF385CQ66K41 422 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 GUSBP11Q6P575 273 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TEX261Q6UWH6 196 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 RHOUQ7L0Q8 258 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 NLRC3Q7RTR2 1065 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 KANSL1Q7Z3B3 1105 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 DCXRQ7Z4W1 244 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 PPP1R3BQ86XI6 285 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 UEVLDQ8IX04 471 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 UBALD2Q8IYN6 164 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TMEM229BQ8NBD8 167 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 NOXO1Q8NFA2 376 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 BEST4Q8NFU0 473 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 OR4C16Q8NGL9 310 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ST7LQ8TDW4 575 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 GPX8Q8TED1 209 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 DNAJA3Q96EY1 480 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 CCDC74BQ96LY2 380 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 SORCS2Q96PQ0 1159 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 WDR77Q9BQA1 342 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 GINS4Q9BRT9 223 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TMPRSS13Q9BYE2 586 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ATG5Q9H1Y0 275 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 C1orf198Q9H425 327 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 METTL17Q9H7H0 456 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 WDR54Q9H977 334 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 G6PC2Q9NQR9 355 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TAS2R4Q9NYW5 299 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 MED11Q9P086 117 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 MYOTQ9UBF9 498 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 EIF3KQ9UBQ5 218 aaKnown RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 SLC23A1Q9UHI7 598 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ATXN7L1Q9ULK2 861 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 FLVCR2Q9UPI3 526 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 VDAC3Q9Y277 283 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 EMC9Q9Y3B6 208 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 U3KQ87 197 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 A0A087WZY1 265 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 IGHV5-10-1A0A0J9YXX1 117 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TMEM269A0A1B0GVZ9 245 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 A0A1W2PQ72 361 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 CPED1A4D0V7 1026 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 METTL21EPA6NDL7 271 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 H0YC42 278 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 WNT11O96014 354 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 IGHG1P01857 330 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TMIGD3P0DMS9 266 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 MYF5P13349 255 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 HLA-DOBP13765 273 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 FOSL2P15408 326 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 NAT1P18440 290 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 HSD11B1P28845 292 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 DHPSP49366 369 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ZNF81P51508 661 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 CLRN1P58418 232 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ZP1P60852 638 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TSPAN5P62079 268 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 CCL7P80098 99 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 SNTA1Q13424 505 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ZMYND11Q15326 602 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 MPPED2Q15777 294 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ZNF239Q16600 458 aaKnown RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 TMEM255AQ5JRV8 349 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 STPG1Q5TH74 334 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 STEAP1BQ6NZ63 245 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ZNF574Q6ZN55 896 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 OR2C3Q8N628 320 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 C1orf162Q8NEQ5 155 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ANGPTL6Q8NI99 470 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms