RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	IGF2	P01344	180 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	TSPAN19	P0C672	248 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	KITLG	P21583	273 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	PRDX6	P30041	224 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	RBM34	P42696	430 aa	Known RBP	10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	RASSF2	P50749	326 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	KLF10	Q13118	480 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	CYLC2	Q14093	348 aa	Predicted RBP	10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	DEFB112	Q30KQ8	113 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	FAM205BP	Q63HN1	556 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	FIP1L1	Q6UN15	594 aa	Known RBP	10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	SYT9	Q86SS6	491 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	PATL1	Q86TB9	770 aa	Known RBP	10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	POU5F2	Q8N7G0	328 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	ATG16L2	Q8NAA4	619 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	NPEPL1	Q8NDH3	523 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	PFN4	Q8NHR9	129 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	FNDC8	Q8TC99	324 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	TSPEAR	Q8WU66	669 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	LIPH	Q8WWY8	451 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	PTP4A1	Q93096	173 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	HAVCR1	Q96D42	359 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	OR2V2	Q96R30	315 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	CITED1	Q99966	193 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	ALG12	Q9BV10	488 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	TMEM165	Q9HC07	324 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	TNFRSF19	Q9NS68	423 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	MIOX	Q9UGB7	285 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	NDRG4	Q9ULP0	352 aa	Known RBP	10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	KIR2DS1	A0A191URI9	304 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	CLPSL1	A2RUU4	121 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	C12orf71	A8MTZ7	269 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	ATP5H	O75947	161 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	NDUFA7	O95182	113 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	COX5B	P10606	129 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	RPS2	P15880	293 aa	Known RBP	10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	CALB2	P22676	271 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	BPIFB3	P59826	476 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	KRT72	Q14CN4	511 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	SLC27A4	Q6P1M0	643 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	BRD3OS	Q6XYD6	125 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689		Q6YL49	198 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	KLB	Q86Z14	1044 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	NKAIN4	Q8IVV8	208 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	SLC30A8	Q8IWU4	369 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	RP9	Q8TA86	221 aa	Known RBP	10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	TMEM239	Q8WW34	195 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	RASSF5	Q8WWW0	418 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	PKP2	Q99959	881 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	MYLK2	Q9H1R3	596 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	POFUT1	Q9H488	388 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	GCM1	Q9NP62	436 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	NOX4	Q9NPH5	578 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	C20orf141	Q9NUB4	165 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	C1RL	Q9NZP8	487 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	TAGLN3	Q9UI15	199 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	STARD10	Q9Y365	291 aa		10.59	□□□□□ -0.71
SHMT2-223	ENST00000556689	ZNF205	O95201	554 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	MSR1	P21757	451 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	TAS2R41	P59536	307 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	RPL27	P61353	136 aa	Known RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	TOP3A	Q13472	1001 aa	Predicted RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	ENDOG	Q14249	297 aa	Known RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	ALG10	Q5BKT4	473 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	COQ5	Q5HYK3	327 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	INTS11	Q5TA45	600 aa	Known RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	GPR157	Q5UAW9	335 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	FOXL2NB	Q6ZUU3	175 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	RHOU	Q7L0Q8	258 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	TMEM255B	Q8WV15	326 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	UBE2F	Q969M7	185 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	DACT3	Q96B18	629 aa	Predicted RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	TAMM41	Q96BW9	452 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	NEIL1	Q96FI4	390 aa	Predicted RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	FAM71F1	Q96KD3	344 aa	Predicted RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	COG8	Q96MW5	612 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	RBM4B	Q9BQ04	359 aa	Known RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	SLC30A2	Q9BRI3	323 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	NUDT16L1	Q9BRJ7	211 aa	Known RBP	10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	WAC	Q9BTA9	647 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	GID8	Q9NWU2	228 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	RIMS3	Q9UJD0	308 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	ZNF281	Q9Y2X9	895 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	NDUFAF1	Q9Y375	327 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689	MED31	Q9Y3C7	131 aa		10.58	□□□□□ -0.72
SHMT2-223	ENST00000556689		A0A1W2PPL8	197 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	MRAS	O14807	208 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	CYB5R3	P00387	301 aa	Predicted RBP	10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	COX4I1	P13073	169 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	SELE	P16581	610 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	HTR5A	P47898	357 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	NUDT2	P50583	147 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	MMP16	P51512	607 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	MTPN	P58546	118 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	RELB	Q01201	579 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	HLX	Q14774	488 aa	Predicted RBP	10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	PDCD1	Q15116	288 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	ASPHD2	Q6ICH7	369 aa		10.57	□□□□□ -0.72
SHMT2-223	ENST00000556689	NLRC3	Q7RTR2	1065 aa		10.57	□□□□□ -0.72

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