RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 C3orf33Q6P1S2 294 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 GUSBP11Q6P575 273 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 GRINAQ7Z429 371 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 TRAPPC6BQ86SZ2 158 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 ANGPTL5Q86XS5 388 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 DND1Q8IYX4 353 aaKnown RBP13.38□□□□□ -0.27
CUX1-215ENST00000556210 PGLYRP3Q96LB9 341 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 PHF7Q9BWX1 381 aaPredicted RBP13.38□□□□□ -0.27
CUX1-215ENST00000556210 SMOC1Q9H4F8 434 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 IGHV1OR21-1A0A087WYE8 117 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 A0A1B0GUH1 482 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 FAM230AA0A1W2PPH8 454 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 TMEM82A0PJX8 343 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 PIAS2O75928 621 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 RNF4P78317 190 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 ACY1Q03154 408 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 CCINQ13939 588 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 LYSMD4Q5XG99 296 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 TRILQ7L0X0 811 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 SYT13Q7L8C5 426 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 TEX19Q8NA77 164 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 SMRP1Q8NCR6 262 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 C12orf10Q9HB07 376 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 ZNF160Q9HCG1 818 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 ST6GALNAC2Q9UJ37 374 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 SRFP11831 508 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 GALP22466 123 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 FXYD4P59646 89 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 C17orf67Q0P5P2 114 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 SLC17A1Q14916 467 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 UNQ6126/PRO20091Q6UXV3 157 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 ZNF679Q8IYX0 411 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 TINAGL1Q9GZM7 467 aaPredicted RBP13.38□□□□□ -0.27
CUX1-215ENST00000556210 GAREM1Q9H706 876 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 APMAPQ9HDC9 416 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 C19orf25Q9UFG5 118 aaPredicted RBP13.38□□□□□ -0.27
CUX1-215ENST00000556210 A6NCN8 305 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 TP53I11O14683 189 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 SIGLEC6O43699 453 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 AGTR1P30556 359 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 HSF1Q00613 529 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 ZNF141Q15928 474 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 C12orf45Q8N5I9 185 aaPredicted RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 OR14L1PQ8NHC6 308 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 CPNE2Q96FN4 548 aaPredicted RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 EMC3Q9P0I2 261 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 KIF25Q9UIL4 384 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 SLC5A6Q9Y289 635 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 HEATR5AQ86XA9 2040 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 VCANP13611 3396 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 ZNF705EA8MWA4 302 aaPredicted RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 ARPC3O15145 178 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 ZNHIT1O43257 154 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 ZFAND5O76080 213 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 CD53P19397 219 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 GAS1P54826 345 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 DCDP81605 110 aaKnown RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 BAMBIQ13145 260 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 ZNF169Q14929 603 aaPredicted RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 EBPQ15125 230 aaKnown RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 OR51T1Q8NGJ9 327 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 PIGTQ969N2 578 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 LRRC46Q96FV0 321 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 UBL7Q96S82 380 aaPredicted RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 SARGQ9BW04 601 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 ATPIF1Q9UII2 106 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 SIT1Q9Y3P8 196 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 HELZP42694 1942 aaKnown RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 SDCBPO00560 298 aaPredicted RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 PHYHO14832 338 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 PIN1P1O15428 100 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 NUDT21O43809 227 aaKnown RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 HOXB5P09067 269 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 CSF1P09603 554 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 DAP3P51398 398 aaKnown RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 PMPCAQ10713 525 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 H1FNTQ75WM6 255 aaPredicted RBP13.37□□□□□ -0.27
CUX1-215ENST00000556210 STEAP2Q8NFT2 490 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 OR10G3Q8NGC4 313 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 PARPBPQ9NWS1 579 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 LRP12Q9Y561 859 aa13.37□□□□□ -0.27
CUX1-215ENST00000556210 LCATP04180 440 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 POU3F2P20265 443 aaPredicted RBP13.36□□□□□ -0.27
CUX1-215ENST00000556210 ZP3P21754 424 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 LTBRP36941 435 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 RPS15P62841 145 aaKnown RBP13.36□□□□□ -0.27
CUX1-215ENST00000556210 ATG4DQ86TL0 474 aaPredicted RBP13.36□□□□□ -0.27
CUX1-215ENST00000556210 OR4D10Q8NGI6 311 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 SLC22A8Q8TCC7 542 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 ZBTB8AQ96BR9 441 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 MS4A3Q96HJ5 214 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 POFUT1Q9H488 388 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 MMACHCQ9Y4U1 282 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 CCDC163A0A0D9SF12 145 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 ABOP16442 354 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 ACSM1Q08AH1 577 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 PLA2G7Q13093 441 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 PXT1Q8NFP0 134 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 OTOSQ8NHW6 89 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 MIB2Q96AX9 1013 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms