RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 H2BFMP0C1H6 154 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF735P0CB33 412 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 HSD11B1P28845 292 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 UBXN2BQ14CS0 331 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 WDR45BQ5MNZ6 344 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 DCAF12L2Q5VW00 463 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 WDR74Q6RFH5 385 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-222ENST00000555774 LANCL3Q6ZV70 420 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 OR51A2Q8NGJ7 313 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 AQP3Q92482 292 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 NUDT16L1Q9BRJ7 211 aaKnown RBP12.06□□□□□ -0.48
SHMT2-222ENST00000555774 ALKBH4Q9NXW9 302 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 PFDN2Q9UHV9 154 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 IGLV3-12A0A075B6K2 115 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 A0A1W2PNV4 684 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 TMEM200CA6NKL6 621 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 CD8AP01732 235 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 IL11P20809 199 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 HSF1Q00613 529 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 SPOCK1Q08629 439 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 OR7A5Q15622 319 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 LRFN4Q6PJG9 635 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 COX15Q7KZN9 410 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 SLC51BQ86UW2 128 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF584Q8IVC4 421 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 RNF138Q8WVD3 245 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 CCDC120Q96HB5 630 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 PRRT1Q99946 306 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 CHST6Q9GZX3 395 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF768Q9H5H4 540 aaKnown RBP12.06□□□□□ -0.48
SHMT2-222ENST00000555774 KLHL13Q9P2N7 655 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 GDF2Q9UK05 429 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-222ENST00000555774 B3GALT5Q9Y2C3 310 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 LOC105371267A0A1B0GV96 52 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DCDC2BA2VCK2 349 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 BDKRB2P30411 391 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 GSK3AP49840 483 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 TLE3Q04726 772 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 SFRP5Q5T4F7 317 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 GALNT16Q8N428 558 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 BPIFB2Q8N4F0 458 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 UQCC2Q9BRT2 126 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 TINAGL1Q9GZM7 467 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-222ENST00000555774 FGF21Q9NSA1 209 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 FAM206AQ9NX38 181 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 CTSFQ9UBX1 484 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 SPTBP11277 2137 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 A0A1B0GTI1 187 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 A0A1B0GW55 424 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 KRBOX1C9JBD0 128 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 BPNT1O95861 308 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DUX4L2P0CJ85 424 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DUX4L3P0CJ86 424 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DUX4L4P0CJ87 422 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DUX4L5P0CJ88 424 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DUX4L6P0CJ89 424 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DUX4L7P0CJ90 424 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 MSX1P28360 303 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 UBE2MP61081 183 aaKnown RBP12.05□□□□□ -0.48
SHMT2-222ENST00000555774 OC90Q02509 493 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-222ENST00000555774 FMODQ06828 376 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 ATPAF1Q5TC12 328 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-222ENST00000555774 RHBDD2Q6NTF9 364 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 PAPD4Q6PIY7 484 aaKnown RBP12.05□□□□□ -0.48
SHMT2-222ENST00000555774 KLHL24Q6TFL4 600 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 OVCH2Q7RTZ1 564 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 RABEPKQ7Z6M1 372 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 ADPRHL1Q8NDY3 354 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 NFAM1Q8NET5 270 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-222ENST00000555774 OR10H5Q8NGA6 315 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 OR5M8Q8NGP6 311 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 FAM46BQ96A09 425 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 MFFQ9GZY8 342 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 PPA2Q9H2U2 334 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 TTYH1Q9H313 450 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-222ENST00000555774 MOB1AQ9H8S9 216 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 DUX4Q9UBX2 424 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 FBLN5Q9UBX5 448 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 SUSD2Q9UGT4 822 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 KLK13Q9UKR3 277 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 KCNMB2Q9Y691 235 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 MTCH2Q9Y6C9 303 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 REV3LO60673 3130 aa12.05□□□□□ -0.48
SHMT2-222ENST00000555774 A0A0D9SG52 128 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 VSTM2BA6NLU5 285 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 TOX3O15405 576 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-222ENST00000555774 UBBP0CG47 229 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 MPGP29372 298 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 RPS27AP62979 156 aaKnown RBP12.04□□□□□ -0.48
SHMT2-222ENST00000555774 UBA52P62987 128 aaKnown RBP12.04□□□□□ -0.48
SHMT2-222ENST00000555774 SORDQ00796 357 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 POU3F1Q03052 451 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF260Q3ZCT1 412 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 SLC25A53Q5H9E4 307 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 LY6G6FQ5SQ64 297 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF813Q6ZN06 617 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 ANKRD37Q7Z713 158 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 ZDHHC22Q8N966 263 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 APCDD1LQ8NCL9 501 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms