RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 COMMD3-BMI1R4GMX3 469 aa11.25□□□□□ -0.61
SHMT2-211ENST00000554310 CHD3Q12873 2000 aaKnown RBP11.25□□□□□ -0.61
SHMT2-211ENST00000554310 A0A096LNT2 108 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 C12orf71A8MTZ7 269 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 M0R233 179 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 TXNDC12O95881 172 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 CCDC159P0C7I6 412 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 JUNBP17275 347 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-211ENST00000554310 STOMP27105 288 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 LAP3P28838 519 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 PCSK6P29122 969 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 SLC6A6P31641 620 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 PDLIM4P50479 330 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 CXCR4P61073 352 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 MSMPQ1L6U9 139 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 MICAQ29983 383 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 SYT9Q86SS6 491 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 PAQR4Q8N4S7 273 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-211ENST00000554310 LINC00471Q8N535 108 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 C10orf105Q8TEF2 133 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 GPA33Q99795 319 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 BCL2L14Q9BZR8 327 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 OR2H1Q9GZK4 316 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 SYT4Q9H2B2 425 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 POLE4Q9NR33 117 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 VSX1Q9NZR4 365 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-211ENST00000554310 ENOPH1Q9UHY7 261 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 TIMM10BQ9Y5J6 103 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 GMPPBQ9Y5P6 360 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 CEPT1Q9Y6K0 416 aa11.24□□□□□ -0.61
SHMT2-211ENST00000554310 TMEM129A0AVI4 362 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 ARPC3O15145 178 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 SYNGR3O43761 229 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 LY6HO94772 140 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 FAM157BP0CG42 384 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 CCL2P13500 99 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 CTLA4P16410 223 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 APEX1P27695 318 aaKnown RBP11.23□□□□□ -0.61
SHMT2-211ENST00000554310 GSTT1P30711 240 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 POLR2IP36954 125 aaKnown RBP11.23□□□□□ -0.61
SHMT2-211ENST00000554310 RAD52P43351 418 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 GSSP48637 474 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 PSG4Q00888 419 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 KRTAP1-1Q07627 177 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 LOXL1Q08397 574 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-211ENST00000554310 CDK5R2Q13319 367 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 ENDOGQ14249 297 aaKnown RBP11.23□□□□□ -0.61
SHMT2-211ENST00000554310 LAIR2Q6ISS4 152 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 RGS7BPQ6MZT1 257 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-211ENST00000554310 RPL13AP3Q6NVV1 102 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 C1orf94Q6P1W5 598 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 PGBD2Q6P3X8 592 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 DNM1P34Q6PK57 102 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 UNQ6126/PRO20091Q6UXV3 157 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 GPR141Q7Z602 305 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 MAPK1IP1LQ8NDC0 245 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 CPEB3Q8NE35 698 aaKnown RBP11.23□□□□□ -0.61
SHMT2-211ENST00000554310 POM121Q96HA1 1249 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 HRASLS5Q96KN8 279 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 SYT3Q9BQG1 590 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 PIMREGQ9BSJ6 248 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 ZNF416Q9BWM5 594 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 OR52D1Q9H346 318 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 VCX3AQ9NNX9 186 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 PAPOLBQ9NRJ5 636 aaKnown RBP11.23□□□□□ -0.61
SHMT2-211ENST00000554310 PTTG2Q9NZH5 202 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 IL20RAQ9UHF4 553 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 IER3IP1Q9Y5U9 82 aa11.23□□□□□ -0.61
SHMT2-211ENST00000554310 A0A1W2PPW3 197 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 LOC390937A0A1W2PQ73 354 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 VWC2LB2RUY7 222 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 ZNF701M0R085 212 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-211ENST00000554310 SLC1A7O00341 560 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 IMPA2O14732 288 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 ICMTO60725 284 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 MRPS14O60783 128 aaKnown RBP11.22□□□□□ -0.61
SHMT2-211ENST00000554310 KHDRBS3O75525 346 aaKnown RBP11.22□□□□□ -0.61
SHMT2-211ENST00000554310 CCNB2O95067 398 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 PPP1R3DO95685 299 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 TP53P04637 393 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-211ENST00000554310 ADRA2AP08913 450 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 HOXB4P17483 251 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-211ENST00000554310 GDI2P50395 445 aaKnown RBP11.22□□□□□ -0.61
SHMT2-211ENST00000554310 UCP2P55851 309 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 SELENOVP59797 346 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 IL5RAQ01344 420 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 SCRN3Q0VDG4 424 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 TSPAN31Q12999 210 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.22□□□□□ -0.612e-7■■■■■ 43.2
SHMT2-211ENST00000554310 ZNF620Q6ZNG0 422 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 JAZF1Q86VZ6 243 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 PARP8Q8N3A8 854 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 GNPDA2Q8TDQ7 276 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 POM121L2Q96KW2 1035 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 SNX18Q96RF0 628 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 FEVQ99581 238 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 IFT27Q9BW83 186 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 ABCA2Q9BZC7 2435 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 WNT5BQ9H1J7 359 aa11.22□□□□□ -0.61
SHMT2-211ENST00000554310 MS4A5Q9H3V2 200 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms