RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SLC25A16P16260 332 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 SPI1P17947 270 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 POU1F1P28069 291 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 PDLIM4P50479 330 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 NKPD1Q17RQ9 610 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 PCGF3Q3KNV8 242 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 MBNL2Q5VZF2 373 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 CYB561A3Q8NBI2 242 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 ABHD4Q8TB40 342 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 SORCS2Q96PQ0 1159 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 DDOQ99489 341 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 ATF6BQ99941 703 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 SYT3Q9BQG1 590 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 FN3KQ9H479 309 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 CYB5R1Q9UHQ9 305 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 DUSP13Q9UII6 198 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 GDF2Q9UK05 429 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 LHFPL6Q9Y693 200 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 COMMD3-BMI1R4GMX3 469 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 PRR23D1E9PI22 279 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 H7C1Q1 480 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 RER1O15258 196 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 IGHV3-13P01766 116 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 TFP02787 698 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 SCG5P05408 212 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 PRR23D2P0DMB1 279 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 GGT2P36268 569 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 WNT5AP41221 380 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 ENTPD1P49961 510 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 PPP1CBP62140 327 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 MRPS11P82912 194 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 GINS1Q14691 196 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 TEX30Q5JUR7 227 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 SLC35D3Q5M8T2 416 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF362Q5T0B9 420 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 SLC18B1Q6NT16 456 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 RFPL4BQ6ZWI9 263 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF101Q8IZC7 436 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 HS3ST5Q8IZT8 346 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 ICA1LQ8NDH6 482 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF540Q8NDQ6 660 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 OR5L1Q8NGL2 311 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 FAM168AQ92567 244 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 SPTSSAQ969W0 71 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 APOBEC3DQ96AK3 386 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 FOXN4Q96NZ1 517 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 PIMREGQ9BSJ6 248 aa12.35□□□□□ -0.43
CCDC88C-207ENST00000554051 LOC390937A0A1W2PQ73 354 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 TMEM129A0AVI4 362 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 PLSCR5A0PG75 271 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 SURF4O15260 269 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 MPZL1O95297 269 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 CRISP1P54107 249 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 CDK5Q00535 292 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 MEP1BQ16820 701 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 PCK2Q16822 640 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 CCDC92Q53HC0 331 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 LCN1P1Q5VSP4 162 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 TMEM154Q6P9G4 183 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 IQCF1Q8N6M8 205 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 OR9Q1Q8NGQ5 310 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 OR6K6Q8NGW6 343 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 MARS2Q96GW9 593 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 DIRC2Q96SL1 478 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 PITX2Q99697 317 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 RBM4BQ9BQ04 359 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 OR51B6Q9H340 312 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 HINT3Q9NQE9 182 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 DDX28Q9NUL7 540 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 NKIRAS2Q9NYR9 191 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 ARFGEF3Q5TH69 2177 aa12.34□□□□□ -0.43
CCDC88C-207ENST00000554051 ITPR3Q14573 2671 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 TRIM64A6NGJ6 449 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 TRIM64BA6NI03 449 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 GLCEO94923 617 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 APOC1P02654 83 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 IGFBP1P08833 259 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 ADRA2AP08913 450 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 PRKACGP22612 351 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 IGFBP5P24593 272 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 PYCR1P32322 319 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 SLC15A1P46059 708 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 KPNB1Q14974 876 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 KDM4DQ6B0I6 523 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 RHOUQ7L0Q8 258 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 SHFQ7M4L6 423 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 SLC25A40Q8TBP6 338 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 LRTOMTQ8WZ04 291 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 INTS14Q96SY0 518 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 MRPL22Q9NWU5 206 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 TAAR3PQ9P1P4 343 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 OAZ3Q9UMX2 235 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 ORC6Q9Y5N6 252 aa12.33□□□□□ -0.44
CCDC88C-207ENST00000554051 C17orf100A8MU93 164 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF878C9JN71 531 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 NDUFS7O75251 213 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 SPARCP09486 303 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 GSTT1P30711 240 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms