RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 ASH2LQ9UBL3 628 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 POLR1DQ9Y2S0 133 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 TNRC6AQ8NDV7 1962 aaKnown RBP11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 TMEM212A6NML5 194 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 CENPBD1B2RD01 187 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 RER1O15258 196 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 CASRP41180 1078 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 CSNK2A1P68400 391 aaPredicted RBP11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 HIST3H3Q16695 136 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 RNASE12Q5GAN4 147 aaKnown RBP11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 XKRXQ6PP77 449 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 PAMR1Q6UXH9 720 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 CATSPERDQ86XM0 798 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 IZUMO1Q8IYV9 350 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 OR6N1Q8NGY5 312 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 LGALS14Q8TCE9 139 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 FAM173AQ9BQD7 235 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 LUZP4Q9P127 313 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 KLHL9Q9P2J3 617 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 UGT2A1Q9Y4X1 527 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 SLC2A1P11166 492 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 FKBP2P26885 142 aaKnown RBP11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 GFRA1P56159 465 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 C3AR1Q16581 482 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 TMPRSS12Q86WS5 348 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 ZNF454Q8N9F8 522 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 KIAA1143Q96AT1 154 aaPredicted RBP11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 TTTY12Q9BZ98 90 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 G6PC2Q9NQR9 355 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 GLTPQ9NZD2 209 aa11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 GDF2Q9UK05 429 aaPredicted RBP11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 BOKQ9UMX3 212 aaPredicted RBP11.29□□□□□ -0.6
VIPAS39-206ENST00000553888 ISPDA4D126 451 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 AQP8O94778 261 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 H2BFMP0C1H6 154 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 CSNK1A1P48729 337 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 NOVA1P51513 510 aaKnown RBP11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 RASGEF1BQ0VAM2 473 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 PLA2G7Q13093 441 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 SGCAQ16586 387 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 RSPO4Q2I0M5 234 aaPredicted RBP11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 LRRC18Q8N456 261 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 CELF2-AS1Q8N7Q2 184 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 ABHD3Q8WU67 409 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 ADGRG7Q96K78 797 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 FER1L6-AS2Q96M78 137 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 KCNK15Q9H427 330 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 LOC105371267A0A1B0GV96 52 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 LOC102725191A0A1B0GVB3 256 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 TMEM269A0A1B0GVZ9 245 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 EIF1BO60739 113 aaKnown RBP11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 BCAP31P51572 246 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 MTFR2Q6P444 385 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 NRARPQ7Z6K4 114 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 LRRTM1Q86UE6 522 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 TMEM123Q8N131 208 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 Q8N402 240 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 GPR148Q8TDV2 347 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 RNF133Q8WVZ7 376 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 NAA11Q9BSU3 229 aaPredicted RBP11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 OR2B2Q9GZK3 357 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 TCF7L1Q9HCS4 588 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 R4GMQ9 66 aa11.28□□□□□ -0.6
VIPAS39-206ENST00000553888 P2RY10O00398 339 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 GPR171O14626 319 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 LANCL1O43813 399 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 HRGP04196 525 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 CFL1P23528 166 aaKnown RBP11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 NBL1P41271 181 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 RFX2P48378 723 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 AGFG1P52594 562 aaKnown RBP11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 RAC3P60763 192 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 FDX2Q6P4F2 183 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 TRILQ7L0X0 811 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 GLCCI1Q86VQ1 547 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 SERPINA12Q8IW75 414 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 TMEM251Q8N6I4 163 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 ZNF671Q8TAW3 534 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 ACOT12Q8WYK0 555 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 SOX7Q9BT81 388 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 RBM24Q9BX46 236 aaKnown RBP11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 ABI3Q9P2A4 366 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 OR52A1Q9UKL2 312 aa11.27□□□□□ -0.6
VIPAS39-206ENST00000553888 TRBV5-7A0A0A0MS05 114 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 IFITM5A6NNB3 132 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 ZNF432O94892 652 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 MEOX1P50221 254 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 PRKXP51817 358 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 CADM3Q8N126 398 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 OR2V1Q8NHB1 315 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 KCNE4Q8WWG9 221 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 GCDHQ92947 438 aaPredicted RBP11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 ZNF416Q9BWM5 594 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 LIN7BQ9HAP6 207 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 CYSLTR2Q9NS75 346 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 DLL3Q9NYJ7 618 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 LIPGQ9Y5X9 500 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 DMXL2Q8TDJ6 3036 aa11.27□□□□□ -0.61
VIPAS39-206ENST00000553888 MYO7BQ6PIF6 2116 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms