RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ETV7Q9Y603 341 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 WDPCPO95876 746 aa23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 CD2P06729 351 aa23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 UBCP0CG48 685 aaKnown RBP23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 POU3F2P20265 443 aaPredicted RBP23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 CDAP32320 146 aa23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 GFRA1P56159 465 aa23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 SCAND1P57086 179 aa23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 LSM6P62312 80 aaKnown RBP23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 FAM206AQ9NX38 181 aa23.34■■□□□ 1.33
CCDC88C-205ENST00000553403 ZNF878C9JN71 531 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 H0YC42 278 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 TM4SF5O14894 197 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 FSTP19883 344 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 INPP1P49441 399 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 BCL2L15Q5TBC7 163 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 MZT2BQ6NZ67 158 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 NEDD4LQ96PU5 975 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 LIN7BQ9HAP6 207 aa23.33■■□□□ 1.33
CCDC88C-205ENST00000553403 MAS1P04201 325 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 HPNP05981 417 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 PRKAR1AP10644 381 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 MAP2K3P46734 347 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 EIF1AXP47813 144 aaKnown RBP23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 CFAP77Q6ZQR2 320 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 CELF2-AS1Q8N7Q2 184 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 RFT1Q96AA3 541 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 ABHD1Q96SE0 405 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 ZNF703Q9H7S9 590 aaPredicted RBP23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 FOXD3Q9UJU5 478 aaPredicted RBP23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 GUCA1AP43080 201 aaPredicted RBP23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 PDSS1Q5T2R2 415 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 SULF2Q8IWU5 870 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 C20orf196Q8IYI0 205 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 CMTM4Q8IZR5 234 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 CHAC2Q8WUX2 184 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 ZC3HAV1LQ96H79 300 aaKnown RBP23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 THAP7Q9BT49 309 aaPredicted RBP23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 HDHD2Q9H0R4 259 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 ABCG5Q9H222 651 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 MOB1AQ9H8S9 216 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 OR5V1Q9UGF6 321 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 CLEC4AQ9UMR7 237 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 RCE1Q9Y256 329 aa23.32■■□□□ 1.32
CCDC88C-205ENST00000553403 NCKAP5O14513 1909 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 KIAA1549Q9HCM3 1950 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 A0A1B0GVC2 190 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 LOC107986453A0A1B0GWG9 222 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 A6NIN4 97 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 H3BSH0 61 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 CTDSPLO15194 276 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 CXCL13O43927 109 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 ADRB1P08588 477 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 MMP15P51511 669 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 NOVA1P51513 510 aaKnown RBP23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 PHYHD1Q5SRE7 291 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 ABLIM2Q6H8Q1 611 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 LINC00696Q6ZRV3 163 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 FCRLAQ7L513 359 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 ELMOD2Q8IZ81 293 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 DRAXINQ8NBI3 349 aaPredicted RBP23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 OR10D3Q8NH80 312 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 RAB40AQ8WXH6 277 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 TRIM63Q969Q1 353 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 CKLFQ9UBR5 152 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 STEAP1Q9UHE8 339 aa23.31■■□□□ 1.32
CCDC88C-205ENST00000553403 DHHO43323 396 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 IGFBP3P17936 291 aaPredicted RBP23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 MSR1P21757 451 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 STARP49675 285 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 DTX3Q8N9I9 347 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 SLC39A7Q92504 469 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 SLC25A38Q96DW6 304 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 NELFAQ9H3P2 528 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 RBFOX1Q9NWB1 397 aaKnown RBP23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 PLA2G3Q9NZ20 509 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 ASH2LQ9UBL3 628 aa23.3■■□□□ 1.32
CCDC88C-205ENST00000553403 LYRM1O43325 122 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 RANBP1P43487 201 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 KNTC1P50748 2209 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 PSMA6P60900 246 aaKnown RBP23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 UBQLNLQ8IYU4 475 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 GALNT16Q8N428 558 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 DNAAF1Q8NEP3 725 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 OR13C3Q8NGS6 347 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 CPNE4Q96A23 557 aaPredicted RBP23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 PBOV1Q9GZY1 135 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 PNRC2Q9NPJ4 139 aaKnown RBP23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 FLVCR1Q9Y5Y0 555 aa23.29■■□□□ 1.32
CCDC88C-205ENST00000553403 ZNF716A6NP11 495 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 GSTZ1O43708 216 aaPredicted RBP23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 CD37P11049 281 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 HSD11B1P28845 292 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 SELENOPP49908 381 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 CLDN12P56749 244 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 SOX8P57073 446 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 TAF13Q15543 124 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 SGCAQ16586 387 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 ZNF57Q68EA5 555 aaPredicted RBP23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 ASPHD2Q6ICH7 369 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms