RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NPTNQ9Y639 398 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ZSCAN5BA6NJL1 495 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 RRHO14718 337 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 SLC25A17O43808 307 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 PPP1R3DO95685 299 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 RAB36O95755 333 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 IGHV4-59P01825 116 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 LCKP06239 509 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 KRT16P08779 473 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 UROSP10746 265 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 THRBP10828 461 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 LAMP1P11279 417 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 B4GALT1P15291 398 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 ZNF250P15622 560 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 IL7RP16871 459 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 TNFRSF1AP19438 455 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 IMPDH1P20839 514 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 SOAT1P35610 550 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 ZNF81P51508 661 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 MFAP4P55083 255 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 RPL38P63173 70 aaKnown RBP5.39□□□□□ -1.55
LIMA1-204ENST00000549064 KCNJ10P78508 379 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 DGCR2P98153 550 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 PAX2Q02962 417 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 FUT5Q11128 374 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 CALCOCO2Q13137 446 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 PCLAFQ15004 111 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 CHI3L2Q15782 390 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 ARHGAP11BQ3KRB8 267 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 FAM153CQ494X1 144 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 CARD17Q5XLA6 110 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 C16orf62Q7Z3J2 963 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 CCDC36Q8IYA8 594 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 C1orf174Q8IYL3 243 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 LYG1Q8N1E2 194 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 TMEM86BQ8N661 226 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 Q8NFD4 153 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 OR2T11Q8NH01 316 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 DYRK2Q92630 601 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 C8orf49Q96NF6 230 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 CCT7Q99832 543 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 TAPBPLQ9BX59 468 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 GRPEL1Q9HAV7 217 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 NOX4Q9NPH5 578 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 RRAGDQ9NQL2 400 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-204ENST00000549064 SLCO1C1Q9NYB5 712 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 TMEM216Q9P0N5 145 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 OR5V1Q9UGF6 321 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 STK38LQ9Y2H1 464 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 DNAH1Q9P2D7 4330 aa5.39□□□□□ -1.55
LIMA1-204ENST00000549064 SLC22A23A1A5C7 686 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 CBY3A6NI87 242 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 USP17L23D6RBM5 183 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 TM9SF1O15321 606 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 PAX4O43316 350 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 VAMP5O95183 116 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 TGDSO95455 350 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 PPIAL4GP0DN37 164 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 PNMTP11086 282 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 ZNF43P17038 809 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 TAC1P20366 129 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 CXCR1P25024 350 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 CDAP32320 146 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 SOX2P48431 317 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 PLTPP55058 493 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 SELENOVP59797 346 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 RBBP4Q09028 425 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 SCARB2Q14108 478 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 ZMYND11Q15326 602 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 RFTN2Q52LD8 501 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-204ENST00000549064 ESCO2Q56NI9 601 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 DEFB121Q5J5C9 76 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 TMEM268Q5VZI3 342 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 CLEC6AQ6EIG7 209 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 FRRS1Q6ZNA5 592 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 RNF130Q86XS8 419 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 TMEM123Q8N131 208 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 SPICQ8N5J4 248 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 CCNYL1Q8N7R7 359 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 ZSCAN4Q8NAM6 433 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-204ENST00000549064 PSMA8Q8TAA3 256 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 SFXN5Q8TD22 340 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 DCAKDQ8WVC6 231 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 C11orf40Q8WZ69 217 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 OR5P2Q8WZ92 322 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 VPS33AQ96AX1 596 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 SLC25A36Q96CQ1 311 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 L3HYPDHQ96EM0 354 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 PGAM5Q96HS1 289 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 SLC35G5Q96KT7 338 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 FCRL1Q96LA6 429 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 OR2M2Q96R28 347 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 OR51I1Q9H343 314 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 EXOSC3Q9NQT5 275 aaKnown RBP5.38□□□□□ -1.55
LIMA1-204ENST00000549064 C1orf109Q9NX04 203 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 B3GAT1Q9P2W7 334 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 ATP6V1HQ9UI12 483 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 RASD1Q9Y272 281 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 WDR45Q9Y484 360 aa5.38□□□□□ -1.55
LIMA1-204ENST00000549064 POMT1Q9Y6A1 747 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms