RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NPIPA1Q9UND3 350 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 FBXO7Q9Y3I1 522 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 KCNE1BA0A087WTH5 132 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 A0A0U1RQK1 487 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 A0A1W2PR48 441 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 IFITM5A6NNB3 132 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 H7C417 338 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PMP2P02689 132 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 FABP1P07148 127 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 FOSL1P15407 271 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 ZP3P21754 424 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PRLHRP49683 370 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 SUMO3P55854 103 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 SLC26A5P58743 744 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 TAS2R19P59542 299 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 MGAT2Q10469 447 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 BAMBIQ13145 260 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 DUSP5Q16690 384 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 EIF2S3LQ2VIR3 472 aaKnown RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 HENMT1Q5T8I9 393 aaKnown RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 TEPPQ6URK8 271 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF550Q7Z398 422 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PXKQ7Z7A4 578 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 CDH26Q8IXH8 852 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF283Q8N7M2 679 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 FRMD1Q8N878 549 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 OR4C15Q8NGM1 316 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 ISOC2Q96AB3 205 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 CLDN23Q96B33 292 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 SLC6A17Q9H1V8 727 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PPP1R3EQ9H7J1 279 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 A4GALTQ9NPC4 353 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 TUBG2Q9NRH3 451 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF346Q9UL40 294 aaKnown RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PLEKHM1Q9Y4G2 1056 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 SCN3AQ9NY46 2000 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 ATRXP46100 2492 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 A0A0A6YYC8 382 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 A0A1W2PS29 197 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 I3L1I5 382 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 AIPO00170 330 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 SURF4O15260 269 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 NME2P1O60361 137 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 RDH16O75452 317 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 CRTAPO75718 401 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 NFATC1O95644 943 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 CCNOP22674 350 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 GNRHRP30968 328 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 AFF3P51826 1226 aaKnown RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PRDX1Q06830 199 aaKnown RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 KIAA0141Q14154 515 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 CDKN3Q16667 212 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 MANEAQ5SRI9 462 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 C12orf73Q69YU5 71 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 NIPAL3Q6P499 406 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 TREML4Q6UXN2 200 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 TRAPPC6BQ86SZ2 158 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 SLC35F3Q8IY50 421 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 MUC20Q8N307 709 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 STPG2Q8N412 459 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 OR1M1Q8NGA1 313 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 OR4K17Q8NGC6 315 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 OR52E1Q8NGJ3 308 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 OR1S2Q8NGQ3 325 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 OR5H2Q8NGV7 314 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 NUBPLQ8TB37 319 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 HOXB13Q92826 284 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 YIPF5Q969M3 257 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 FAM3DQ96BQ1 224 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PIGMQ9H3S5 423 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 KCNK15Q9H427 330 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 CA10Q9NS85 328 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 C20orf141Q9NUB4 165 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 ZMAT5Q9UDW3 170 aaKnown RBP4.96□□□□□ -1.62
LIMA1-203ENST00000547825 KCNIP3Q9Y2W7 256 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 HEBP2Q9Y5Z4 205 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM14AQ9Y6G1 99 aa4.96□□□□□ -1.62
LIMA1-203ENST00000547825 PRRT4C9JH25 899 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 PROB1E7EW31 1015 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 DCTN6O00399 190 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 CDC42EP2O14613 210 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 MPC2O95563 127 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 RHOP08100 348 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 OR2T7P0C7T2 308 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 SLC2A1P11166 492 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 ATP5A1P25705 553 aaKnown RBP4.95□□□□□ -1.62
LIMA1-203ENST00000547825 ITGB7P26010 798 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 FGF9P31371 208 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-203ENST00000547825 GPR143P51810 404 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 SGCAQ16586 387 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 MEP1BQ16820 701 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 MPEG1Q2M385 716 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 Q499Y3 187 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM35AQ53FP2 167 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM31Q5JXX7 168 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF836Q6ZNA1 936 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 MARCH3Q86UD3 253 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF619Q8N2I2 560 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 DEFB119Q8N690 84 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 OR52R1Q8NGF1 315 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms