RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF583Q96ND8 569 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 SIKE1Q9BRV8 207 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 SSBP3Q9BWW4 388 aaPredicted RBP11.38□□□□□ -0.59
SS18-204ENST00000539244 PRDM13Q9H4Q3 707 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 STARD10Q9Y365 291 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 PRKDCP78527 4128 aaKnown RBP11.37□□□□□ -0.59
SS18-204ENST00000539244 TRAV27A0A087WT01 109 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 IGHV2-70DA0A0C4DH43 119 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 SGCEO43556 437 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 SLC9A3P48764 834 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 GUCY1A3Q02108 690 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 PRKCDQ05655 676 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 ZNF181Q2M3W8 571 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 CYBRD1Q53TN4 286 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 C16orf87Q6PH81 154 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 OFCC1Q8IZS5 231 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 OR51A7Q8NH64 312 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 PTP4A1Q93096 173 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 EMC7Q9NPA0 242 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 ATPIF1Q9UII2 106 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 TGP01266 2768 aa11.37□□□□□ -0.59
SS18-204ENST00000539244 TEX13CA0A0J9YWL9 993 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 OR6C6A6NF89 314 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 MDKP21741 143 aaPredicted RBP11.36□□□□□ -0.59
SS18-204ENST00000539244 FUT4P22083 530 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 IFNA8P32881 189 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 KDELR2P33947 212 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 ERFP50548 548 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 SELENOWP63302 87 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 AQP6Q13520 282 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 TTMPQ5BVD1 217 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 SLC27A4Q6P1M0 643 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 BTNL3Q6UXE8 466 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 FBXW12Q6X9E4 464 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 OAFQ86UD1 273 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 KLBQ86Z14 1044 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 NRMQ8IXM6 262 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 RNF113BQ8IZP6 322 aaKnown RBP11.36□□□□□ -0.59
SS18-204ENST00000539244 POU5F2Q8N7G0 328 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 PCYOX1LQ8NBM8 494 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 C10orf82Q8WW14 230 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 RAB40AQ8WXH6 277 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 TMIGD2Q96BF3 282 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 MAGEB18Q96M61 343 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 TMEM165Q9HC07 324 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 INTS9Q9NV88 658 aaKnown RBP11.36□□□□□ -0.59
SS18-204ENST00000539244 MIOXQ9UGB7 285 aa11.36□□□□□ -0.59
SS18-204ENST00000539244 TRAV40A0A0B4J280 105 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 A0A1B0GUS0 222 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 A0A1B0GWJ7 208 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 PRSS37A4D1T9 235 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 EFCAB9A8MZ26 197 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 FAM220BPB1ANY3 271 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 H7C1C5 153 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 CD14P08571 375 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 RPS2P15880 293 aaKnown RBP11.35□□□□□ -0.59
SS18-204ENST00000539244 CTLA4P16410 223 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 RGS6P49758 472 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 LSM6P62312 80 aaKnown RBP11.35□□□□□ -0.59
SS18-204ENST00000539244 LCN6P62502 163 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 GNB2P62879 340 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 LRRC23Q53EV4 343 aaPredicted RBP11.35□□□□□ -0.59
SS18-204ENST00000539244 MESTQ5EB52 335 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 FAM122BQ7Z309 247 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 MICU2Q8IYU8 434 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 OR8G5Q8NG78 346 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 OR13C2Q8NGS9 318 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 OR13G1Q8NGZ3 307 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 TAF15Q92804 592 aaKnown RBP eCLIP11.35□□□□□ -0.59
SS18-204ENST00000539244 RASD2Q96D21 266 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 PLEKHA8Q96JA3 519 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 MEGF10Q96KG7 1140 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 MRGBPQ9NV56 204 aa11.35□□□□□ -0.59
SS18-204ENST00000539244 SOX21Q9Y651 276 aaPredicted RBP11.35□□□□□ -0.59
SS18-204ENST00000539244 WNK1Q9H4A3 2382 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 IGHV3OR16-10A0A075B7F0 116 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 A0A0G2JND7 137 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 KIR2DS1A0A191URI9 304 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 BBIP1A8MTZ0 92 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 XKRYO14609 159 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 FFAR1O14842 300 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 EDF1O60869 148 aaKnown RBP11.34□□□□□ -0.59
SS18-204ENST00000539244 GPANK1O95872 356 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 SRP9P49458 86 aaKnown RBP11.34□□□□□ -0.59
SS18-204ENST00000539244 BPIFB3P59826 476 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 TRAM2Q15035 370 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 ZNF404Q494X3 552 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 CCDC92Q53HC0 331 aaPredicted RBP11.34□□□□□ -0.59
SS18-204ENST00000539244 ZNF362Q5T0B9 420 aaPredicted RBP11.34□□□□□ -0.59
SS18-204ENST00000539244 TMPRSS11FQ6ZWK6 438 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 ATG16L2Q8NAA4 619 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 OR5L1Q8NGL2 311 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 OR1F12Q8NHA8 337 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 ZNF420Q8TAQ5 688 aaPredicted RBP11.34□□□□□ -0.59
SS18-204ENST00000539244 ACOT11Q8WXI4 607 aaPredicted RBP11.34□□□□□ -0.59
SS18-204ENST00000539244 SLC7A6Q92536 515 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 NEIL1Q96FI4 390 aaPredicted RBP11.34□□□□□ -0.59
SS18-204ENST00000539244 TPD52L3Q96J77 140 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 Q96M85 177 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 SLC30A2Q9BRI3 323 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms