RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SCG5P05408 212 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 CTLA4P16410 223 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 SDHAP31040 664 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 FHL1Q13642 323 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 VASH1Q7L8A9 365 aaPredicted RBP12.46□□□□□ -0.41
VPS28-215ENST00000531924 ADCK1Q86TW2 530 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 ATG16L2Q8NAA4 619 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 OR1F12Q8NHA8 337 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 PTP4A1Q93096 173 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 RASD2Q96D21 266 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 SAMD8Q96LT4 415 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 SYT4Q9H2B2 425 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 DDX28Q9NUL7 540 aaKnown RBP12.46□□□□□ -0.41
VPS28-215ENST00000531924 ASH2LQ9UBL3 628 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 EGFL7Q9UHF1 273 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 PPP1R3CQ9UQK1 317 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 COA3Q9Y2R0 106 aaPredicted RBP12.46□□□□□ -0.41
VPS28-215ENST00000531924 STARD10Q9Y365 291 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 SOCS2O14508 198 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 NCK1P16333 377 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 KITLGP21583 273 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 RGS6P49758 472 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 RPS6KA3P51812 740 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 LSM6P62312 80 aaKnown RBP12.45□□□□□ -0.42
VPS28-215ENST00000531924 BTG1P62324 171 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 ARMCX4Q5H9R4 360 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 SLC27A4Q6P1M0 643 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 DNM1P34Q6PK57 102 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.45□□□□□ -0.42
VPS28-215ENST00000531924 SLC7A13Q8TCU3 470 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 C22orf15Q8WYQ4 148 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 HAVCR1Q96D42 359 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 ZMYND19Q96E35 227 aaPredicted RBP12.45□□□□□ -0.42
VPS28-215ENST00000531924 RSRC1Q96IZ7 334 aaKnown RBP12.45□□□□□ -0.42
VPS28-215ENST00000531924 MRI1Q9BV20 369 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 POFUT1Q9H488 388 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 NTN4Q9HB63 628 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 IL19Q9UHD0 177 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 IL20RAQ9UHF4 553 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 IER3IP1Q9Y5U9 82 aa12.45□□□□□ -0.42
VPS28-215ENST00000531924 PPIAL4EA0A075B759 164 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 PPIAL4CA0A0B4J2A2 164 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 A0A1W2PRQ8 180 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 OR6C6A6NF89 314 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 UNC119BA6NIH7 251 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 PPIAL4DF5H284 164 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 IGHV2-70P01814 119 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 PPIAL4FP0DN26 164 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 RAC2P15153 192 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 RHCEP18577 417 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 DGCR6Q14129 220 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 TMEM155Q4W5P6 130 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 ESCO2Q56NI9 601 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 SPRNQ5BIV9 151 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 HACD2Q6Y1H2 254 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 DPY19L2P2Q6ZN68 376 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 FAM122BQ7Z309 247 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 OR5AS1Q8N127 324 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 ITLN1Q8WWA0 313 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 SLC7A6Q92536 515 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 CMTM5Q96DZ9 223 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 ZNF582Q96NG8 517 aaPredicted RBP12.44□□□□□ -0.42
VPS28-215ENST00000531924 OR2V2Q96R30 315 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 PLA2G12AQ9BZM1 189 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 CCDC134Q9H6E4 229 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 PTTG3PQ9NZH4 202 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 ADA2Q9NZK5 511 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 OR5V1Q9UGF6 321 aa12.44□□□□□ -0.42
VPS28-215ENST00000531924 SAMD4AQ9UPU9 718 aaKnown RBP12.44□□□□□ -0.42
VPS28-215ENST00000531924 TMEM89A2RUT3 159 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 IFNL4K9M1U5 179 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 PTP4A3O75365 173 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 ZNF26P17031 533 aaPredicted RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 ZFP36P26651 326 aaKnown RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 CRABP1P29762 137 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 COMPP49747 757 aaPredicted RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 SMIM11AP58511 58 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 PSME3P61289 254 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 OTPQ5XKR4 325 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 PGM2L1Q6PCE3 622 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 LRRC28Q86X40 367 aaPredicted RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 MUC20Q8N307 709 aaPredicted RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 ZNF283Q8N7M2 679 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 GJC3Q8NFK1 279 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 OR13G1Q8NGZ3 307 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 OR52J3Q8NH60 311 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 POP5Q969H6 163 aaKnown RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 NUAK2Q9H093 628 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 PATZ1Q9HBE1 687 aaKnown RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 NRIP3Q9NQ35 241 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 DCAF16Q9NXF7 216 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 VSX1Q9NZR4 365 aaPredicted RBP12.43□□□□□ -0.42
VPS28-215ENST00000531924 OPN4Q9UHM6 478 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 SIGLEC7Q9Y286 467 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 AUP1Q9Y679 476 aa12.43□□□□□ -0.42
VPS28-215ENST00000531924 J3QW42 95 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 RER1O15258 196 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 RENP00797 406 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 MDH1P40925 334 aaKnown RBP12.42□□□□□ -0.42
VPS28-215ENST00000531924 MDH2P40926 338 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms