RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 RERGLQ9H628 205 aa9.06□□□□□ -0.96
CD44-227ENST00000528086 MAGIXQ9H6Y5 334 aa9.06□□□□□ -0.96
CD44-227ENST00000528086 SRA1Q9HD15 236 aaKnown RBP9.06□□□□□ -0.96
CD44-227ENST00000528086 PRPF19Q9UMS4 504 aaKnown RBP9.06□□□□□ -0.96
CD44-227ENST00000528086 CDH10Q9Y6N8 788 aa9.06□□□□□ -0.96
CD44-227ENST00000528086 A0A1W2PPW3 197 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 VSTM5A8MXK1 200 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 FAM157AC9JC47 383 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 SGCEO43556 437 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 DOK2O60496 412 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 CDC14BO60729 498 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 ADH4P08319 380 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 NOS3P29474 1203 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 PYCR1P32322 319 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 RPS27P42677 84 aaKnown RBP9.05□□□□□ -0.96
CD44-227ENST00000528086 HTR5AP47898 357 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 RPS6KA3P51812 740 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 PCBD1P61457 104 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 MRPS11P82912 194 aaKnown RBP9.05□□□□□ -0.96
CD44-227ENST00000528086 PPP2R2BQ00005 443 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 COX10Q12887 443 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 AQP6Q13520 282 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 MTX3Q5HYI7 312 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 OR2T5Q6IEZ7 315 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 SLC18B1Q6NT16 456 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 COLCA1Q6ZS62 124 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 RASSF6Q6ZTQ3 369 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 IL17RELQ6ZVW7 336 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 HS3ST5Q8IZT8 346 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 AQP11Q8NBQ7 271 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 ICA1LQ8NDH6 482 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 OR2T29Q8NH02 315 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 OR1F12Q8NHA8 337 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 CLDND2Q8NHS1 167 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 CANT1Q8WVQ1 401 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 RDH5Q92781 318 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 MAP6Q96JE9 813 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 NIPSNAP1Q9BPW8 284 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 IFT27Q9BW83 186 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 RBM4Q9BWF3 364 aaKnown RBP9.05□□□□□ -0.96
CD44-227ENST00000528086 HCAR1Q9BXC0 346 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 NMNAT2Q9BZQ4 307 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 MUC13Q9H3R2 512 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 CHODLQ9H9P2 273 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 MSL2Q9HCI7 577 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 RPRD1BQ9NQG5 326 aaKnown RBP9.05□□□□□ -0.96
CD44-227ENST00000528086 TBCCD1Q9NVR7 557 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 NKIRAS2Q9NYR9 191 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 FBXO9Q9UK97 447 aaPredicted RBP9.05□□□□□ -0.96
CD44-227ENST00000528086 U3KQV3 271 aa9.05□□□□□ -0.96
CD44-227ENST00000528086 LMX1BO60663 402 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 DEAF1O75398 565 aaPredicted RBP9.04□□□□□ -0.96
CD44-227ENST00000528086 SOX14O95416 240 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 CLUP10909 449 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 ACHEP22303 614 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 CRYBB2P43320 205 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 GZMKP49863 264 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 PRSS12P56730 875 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.04□□□□□ -0.96
CD44-227ENST00000528086 CDK5R2Q13319 367 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 CCNIQ14094 377 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 HLXQ14774 488 aaPredicted RBP9.04□□□□□ -0.96
CD44-227ENST00000528086 TSTQ16762 297 aaKnown RBP9.04□□□□□ -0.96
CD44-227ENST00000528086 NKPD1Q17RQ9 610 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 MICAQ29983 383 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 ZNF718Q3SXZ3 478 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 LINC01590Q5TEZ4 76 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.04□□□□□ -0.96
CD44-227ENST00000528086 LINC00346Q8IVM7 164 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 LNX2Q8N448 690 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 SLC37A3Q8NCC5 494 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 OR52E2Q8NGJ4 325 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 OR51L1Q8NGJ5 315 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 BCAS4Q8TDM0 211 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 WACQ9BTA9 647 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 CHID1Q9BWS9 393 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 DGCR6LQ9BY27 220 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 CADM1Q9BY67 442 aaKnown RBP9.04□□□□□ -0.96
CD44-227ENST00000528086 LRMDAQ9H2I8 198 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 KCNN2Q9H2S1 579 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 NTN4Q9HB63 628 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 ARMC1Q9NVT9 282 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 TMEM160Q9NX00 188 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 SLCO1C1Q9NYB5 712 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 PLEK2Q9NYT0 353 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 TREM2Q9NZC2 230 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 CYB5R1Q9UHQ9 305 aa9.04□□□□□ -0.96
CD44-227ENST00000528086 SAMHD1Q9Y3Z3 626 aaKnown RBP9.04□□□□□ -0.96
CD44-227ENST00000528086 LOC100289279A0A1B0GTE1 492 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 TCRBV3S1A0A5B6 114 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 SPRY3O43610 288 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 IDH3BO43837 385 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 CCNB2O95067 398 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 ABHD16AO95870 558 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 KITLGP21583 273 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 ZNF81P51508 661 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 CDH15P55291 814 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 TEKQ02763 1124 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 SCRN3Q0VDG4 424 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 TRAP1Q12931 704 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms