RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 HEATR1Q9H583 2144 aaKnown RBP13.31□□□□□ -0.28
LSM1-203ENST00000520755 A0A1W2PQL4 384 aaPredicted RBP13.31□□□□□ -0.28
LSM1-203ENST00000520755 UBL3O95164 117 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 RAB36O95755 333 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 CDK1P06493 297 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 LIMS3P0CW19 117 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 LIMS4P0CW20 117 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 C21orf33P30042 268 aaPredicted RBP13.31□□□□□ -0.28
LSM1-203ENST00000520755 CHN2P52757 468 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 GABARAPL2P60520 117 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 PSG4Q00888 419 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 EIF2B1Q14232 305 aaKnown RBP13.31□□□□□ -0.28
LSM1-203ENST00000520755 GSG1Q2KHT4 349 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 SLC36A2Q495M3 483 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 KLHL22Q53GT1 634 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 SYT9Q86SS6 491 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 TMEM200AQ86VY9 491 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 ZNF584Q8IVC4 421 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 C14orf79Q96F83 325 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 COPS4Q9BT78 406 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 OR2H1Q9GZK4 316 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 KCNN2Q9H2S1 579 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 ESRP2Q9H6T0 727 aaKnown RBP13.31□□□□□ -0.28
LSM1-203ENST00000520755 RNF121Q9H920 327 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 ERVK-18Q9QC07 812 aa13.31□□□□□ -0.28
LSM1-203ENST00000520755 DPRXA6NFQ7 191 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 PTGES3LE9PB15 166 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 MAGEB4O15481 346 aaPredicted RBP13.3□□□□□ -0.28
LSM1-203ENST00000520755 CTAG2O75638 210 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 FADS2O95864 444 aaKnown RBP13.3□□□□□ -0.28
LSM1-203ENST00000520755 MT-ND2P03891 347 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 LYNP07948 512 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 CELA3BP08861 270 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 OR2T7P0C7T2 308 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 PRF1P14222 555 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 CBR1P16152 277 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 SSTR2P30874 369 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 ATP6V1E1P36543 226 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 ETV1P50549 477 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 IDH3GP51553 393 aaPredicted RBP13.3□□□□□ -0.28
LSM1-203ENST00000520755 CDH15P55291 814 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 RAB1AP62820 205 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 ACTC1P68032 377 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 ACTA1P68133 377 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 BSPH1Q075Z2 132 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 KCTD21Q4G0X4 260 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 PABPC1L2AQ5JQF8 200 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 NCMAPQ5T1S8 102 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 ZNF684Q5T5D7 378 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 C1QTNF12Q5T7M4 302 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 ZNF774Q6NX45 483 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 TMEM108Q6UXF1 575 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 VASH1Q7L8A9 365 aaPredicted RBP13.3□□□□□ -0.28
LSM1-203ENST00000520755 ZNF454Q8N9F8 522 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 OR2T27Q8NH04 317 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 AKR7LQ8NHP1 331 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 SLAMF6Q96DU3 332 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 TMEM80Q96HE8 168 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 HS3ST6Q96QI5 342 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 YTHDF1Q9BYJ9 559 aaKnown RBP13.3□□□□□ -0.28
LSM1-203ENST00000520755 CCNB1IP1Q9NPC3 277 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 ERVK13-1Q9NX77 482 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 SCN3BQ9NY72 215 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 LAMP5Q9UJQ1 280 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 TPRKBQ9Y3C4 175 aa13.3□□□□□ -0.28
LSM1-203ENST00000520755 IGHV1-18A0A0C4DH31 117 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 IRGMA1A4Y4 181 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 OR6C6A6NF89 314 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 ZNF670-ZNF695F2Z2N8 137 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 PSMD9O00233 223 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 SYNGR3O43761 229 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 DOK2O60496 412 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 GOSR1O95249 250 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 ABHD16AO95870 558 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 CD3EP07766 207 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 ZNF14P17017 642 aaPredicted RBP13.29□□□□□ -0.28
LSM1-203ENST00000520755 PAX7P23759 505 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 DCKP27707 260 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 LOXP28300 417 aaPredicted RBP13.29□□□□□ -0.28
LSM1-203ENST00000520755 ARR3P36575 388 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 NR1H2P55055 460 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 SCRN3Q0VDG4 424 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 IRF3Q14653 427 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 RAB35Q15286 201 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 TMEM53Q6P2H8 277 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 TMEM154Q6P9G4 183 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 SPATC1Q76KD6 591 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 PIAS4Q8N2W9 510 aaPredicted RBP13.29□□□□□ -0.28
LSM1-203ENST00000520755 ACBD7Q8N6N7 88 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 CPEB3Q8NE35 698 aaKnown RBP13.29□□□□□ -0.28
LSM1-203ENST00000520755 OR2AJ1Q8NGZ0 328 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 RNF133Q8WVZ7 376 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 IPCEF1Q8WWN9 437 aaPredicted RBP13.29□□□□□ -0.28
LSM1-203ENST00000520755 MNTQ99583 582 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 WACQ9BTA9 647 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 CDADC1Q9BWV3 514 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 CLEC4MQ9H2X3 399 aaPredicted RBP13.29□□□□□ -0.28
LSM1-203ENST00000520755 C1orf198Q9H425 327 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 DDX28Q9NUL7 540 aaKnown RBP13.29□□□□□ -0.28
LSM1-203ENST00000520755 CRNNQ9UBG3 495 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms