RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PLPP7Q8NBV4 271 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 OR6X1Q8NH79 312 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 ASB13Q8WXK3 278 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 SLAMF6Q96DU3 332 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 GAREM1Q9H706 876 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 BEX1Q9HBH7 125 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 CENPMQ9NSP4 180 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 B3GAT1Q9P2W7 334 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 CABIN1Q9Y6J0 2220 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 METTL21EPA6NDL7 271 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 LDLRAD4O15165 306 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 TLX3O43711 291 aaPredicted RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 RAD1O60671 282 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 SCGNO76038 276 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 WNT11O96014 354 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 ERCC1P07992 297 aaPredicted RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 MELTFP08582 738 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 PTHLHP12272 177 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 HSD11B1P28845 292 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 SLC35A1P78382 337 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 KCNMB1Q16558 191 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 TSSK4Q6SA08 328 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 Q6ZTK2 550 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 OR8H1Q8NGG4 311 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 OR4C16Q8NGL9 310 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 OR2T35Q8NGX2 323 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 OR2AJ1Q8NGZ0 328 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 PIGKQ92643 395 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 MESP1Q9BRJ9 268 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 CLEC4MQ9H2X3 399 aaPredicted RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 METTL17Q9H7H0 456 aaPredicted RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 FAM206AQ9NX38 181 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 MGAT4CQ9UBM8 478 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 ZNF69Q9UC07 566 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 SLC23A1Q9UHI7 598 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 ELF5Q9UKW6 265 aaPredicted RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 RAB22AQ9UL26 194 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 C9J4A7 227 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 PGA4P0DJD7 388 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 PGA3P0DJD8 388 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 BDKRB2P30411 391 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 PSMA6P60900 246 aaKnown RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 PCOLCEQ15113 449 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 PEAR1Q5VY43 1037 aaPredicted RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 LCN10Q6JVE6 187 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 STEAP1BQ6NZ63 245 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 TEX261Q6UWH6 196 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 JAGN1Q8N5M9 183 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 CLEC1AQ8NC01 280 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 AGBL5Q8NDL9 886 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 OR11H4Q8NGC9 324 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 M1APQ8TC57 530 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 MS4A3Q96HJ5 214 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 SEC22CQ9BRL7 303 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 UQCC2Q9BRT2 126 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 GINS4Q9BRT9 223 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 ZNF700Q9H0M5 742 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 ALX4Q9H161 411 aaPredicted RBP13.24□□□□□ -0.29
NUP54-217ENST00000514987 APMAPQ9HDC9 416 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 OCIAD1Q9NX40 245 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 PCDHGA5Q9Y5G8 931 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 U3KQ87 197 aa13.24□□□□□ -0.29
NUP54-217ENST00000514987 FREM3P0C091 2139 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 IGKV1D-43A0A0B4J1Z2 117 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 C19orf67A6NJJ6 358 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 ZNF878C9JN71 531 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 P2RY10O00398 339 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 TSC22D2O75157 780 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 OR2A4O95047 310 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 CER1O95813 267 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 IFNA7P01567 189 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 ACSM4P0C7M7 580 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 P2RY4P51582 365 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 DHODHQ02127 395 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 C19orf57Q0VDD7 668 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 SLC25A47Q6Q0C1 308 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 SLC36A1Q7Z2H8 476 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 LYPD6Q86Y78 171 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 OR5D14Q8NGL3 314 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 CCDC107Q8WV48 283 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 OR5B2Q96R09 309 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 OR2A7Q96R45 310 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 SLC25A21Q9BQT8 299 aaPredicted RBP13.23□□□□□ -0.29
NUP54-217ENST00000514987 EMC6Q9BV81 110 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 TMPRSS13Q9BYE2 586 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 PBOV1Q9GZY1 135 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 TMEM138Q9NPI0 162 aa13.23□□□□□ -0.29
NUP54-217ENST00000514987 EIF3KQ9UBQ5 218 aaKnown RBP13.23□□□□□ -0.29
NUP54-217ENST00000514987 A0A1W2PPL8 197 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 DCDC2BA2VCK2 349 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 AQP7P3A6NL99 342 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 ZNF726A6NNF4 738 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 SHISA8B8ZZ34 492 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 D6RAR5 112 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 PYCARD-AS1I3L0S3 204 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 SYT7O43581 403 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 TRAF3IP2O43734 574 aaPredicted RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 DOK2O60496 412 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 NOS1APO75052 506 aaPredicted RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 KDM4BO94953 1096 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms