RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 OR5P2Q8WZ92 322 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ST8SIA4Q92187 359 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 HAVCR1Q96D42 359 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 MOGAT1Q96PD6 335 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 FAM234AQ9H0X4 552 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 LRMDAQ9H2I8 198 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 B3GAT2Q9NPZ5 323 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 UFSP2Q9NUQ7 469 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 KLHL14Q9P2G3 628 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 TXNDC16Q9P2K2 825 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ATP6V1HQ9UI12 483 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 STARD10Q9Y365 291 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 UGT2A1Q9Y4X1 527 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 CAPN7Q9Y6W3 813 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 HMCN2Q8NDA2 5059 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 IGHV3OR15-7A0A075B7D8 119 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 CDHR4A6H8M9 788 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 SEC14L6B5MCN3 397 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 SMIM24O75264 130 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 SEC22BO75396 215 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 SUPT7LO94864 414 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 BGLAPP02818 100 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 AMY1AP04745 511 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 AMY2AP04746 511 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 SERPINE1P05121 402 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 ENO1P06733 434 aaKnown RBP3.78□□□□□ -1.8
USP4-209ENST00000475873 QDPRP09417 244 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 PGA4P0DJD7 388 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 PGA3P0DJD8 388 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 PRPH2P23942 346 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 GDI2P50395 445 aaKnown RBP3.78□□□□□ -1.8
USP4-209ENST00000475873 ERVFRD-1P60508 538 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 ERVK-25P63136 954 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 PUDPQ08623 228 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 MELKQ14680 651 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 SYPL1Q16563 259 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 HIST3H3Q16695 136 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 FAM69AQ5T7M9 428 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 WBP2NLQ6ICG8 309 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 OR2T2Q6IF00 324 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 KLC3Q6P597 504 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 COLCA1Q6ZS62 124 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 CYS1Q717R9 158 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 CENPVQ7Z7K6 275 aaPredicted RBP3.78□□□□□ -1.8
USP4-209ENST00000475873 ZER1Q7Z7L7 766 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 ZNF575Q86XF7 245 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 CLECL1Q8IZS7 167 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 C1orf87Q8N0U7 546 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 OR8H2Q8N162 312 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 CLIP4Q8N3C7 705 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 KRTCAP2Q8N6L1 136 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 FAM216BQ8N7L0 139 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 ANKRD42Q8N9B4 389 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 OR51D1Q8NGF3 324 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 OR4X2Q8NGF9 303 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 XAGE5Q8WWM1 108 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 SEH1LQ96EE3 360 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 RSRC1Q96IZ7 334 aaKnown RBP3.78□□□□□ -1.8
USP4-209ENST00000475873 C4orf45Q96LM5 186 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 DMRTB1Q96MA1 342 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 ZNF347Q96SE7 839 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 FAM110AQ9BQ89 295 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 CENPOQ9BU64 300 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 GSTO2Q9H4Y5 243 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 NANSQ9NR45 359 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 POLE3Q9NRF9 147 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 C19orf73Q9NVV2 129 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 VSX1Q9NZR4 365 aaPredicted RBP3.78□□□□□ -1.8
USP4-209ENST00000475873 EIF3KQ9UBQ5 218 aaKnown RBP3.78□□□□□ -1.8
USP4-209ENST00000475873 GIMAP2Q9UG22 337 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 TAGLN3Q9UI15 199 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 GTF2A1LQ9UNN4 478 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 STK38LQ9Y2H1 464 aa3.78□□□□□ -1.8
USP4-209ENST00000475873 A0A096LPI6 279 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 RNF103-CHMP3A0A140T963 221 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 FAM90A8PA6NJQ4 464 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 DUXAA6NLW8 204 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 LRRC30A6NM36 301 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 ZNF726A6NNF4 738 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 CCL24O00175 119 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 F2RL2O00254 374 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 HMGN4O00479 90 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 PLPP3O14495 311 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 FARS2O95363 451 aaKnown RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 ECDO95905 644 aaPredicted RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 TFF1P04155 84 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 LPLP06858 475 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SNRPAP09012 282 aaKnown RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 RBP1P09455 135 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 IGHV4-30-4P0DP06 118 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SPNP16150 400 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SOAT1P35610 550 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 MTNR1BP49286 362 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SRP9P49458 86 aaKnown RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 RAB25P57735 213 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 NAB1Q13506 487 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 KRT72Q14CN4 511 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 HAGHQ16775 308 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms