RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 WRBO00258 174 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 SCAMP2O15127 329 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CTAG2O75638 210 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 RP2O75695 350 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 FLOT1O75955 427 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CCNB2O95067 398 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 SLC25A14O95258 325 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CD160O95971 181 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 IGLV3-19P01714 112 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 FGF4P08620 206 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 UBTFL6P0CB48 400 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 OR8G3PP0DMU2 310 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CT45A6P0DMU7 189 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CT45A5P0DMU8 189 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CT45A7P0DMV0 189 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 IGFBP3P17936 291 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 GGT1P19440 569 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 GSTM3P21266 225 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 WARSP23381 471 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 OR1E1P30953 314 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 VSX2P58304 361 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 KRTAP12-4P60329 112 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 ESRRGP62508 458 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 ARG2P78540 354 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 ILKQ13418 452 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 IL18Q14116 193 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 PSMD5Q16401 504 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 UBE2SQ16763 222 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 LINC00483Q53H64 154 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CT45A1Q5HYN5 189 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 C1orf185Q5T7R7 199 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 UBE2UQ5VVX9 321 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 GPR107Q5VW38 600 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 METTL21CQ5VZV1 264 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 TWF2Q6IBS0 349 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 NPSR1Q6W5P4 371 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 KRTAP13-1Q8IUC0 172 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 OFCC1Q8IZS5 231 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 PQLC3Q8N755 202 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 OR9G4Q8NGQ1 327 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CT45A3Q8NHU0 189 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 MRGPRFQ96AM1 343 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 TM4SF18Q96CE8 201 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 SEH1LQ96EE3 360 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 GALNT14Q96FL9 552 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 XPO6Q96QU8 1125 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 MICU1Q9BPX6 476 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 NDFIP1Q9BT67 221 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 ACTR3CQ9C0K3 210 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 SAV1Q9H4B6 383 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 AUNIPQ9H7T9 357 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 SYNDIG1Q9H7V2 258 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 C12orf10Q9HB07 376 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 BEX1Q9HBH7 125 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 CCNB1IP1Q9NPC3 277 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 AGPAT4Q9NRZ5 378 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 C20orf96Q9NUD7 363 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 FAM49BQ9NUQ9 324 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 IGLV1-50A0A075B6I6 118 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 KBTBD11-OT1A0A1B0GTJ5 212 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 NCBP2LA6PVI3 153 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 SLC9A3R1O14745 358 aaPredicted RBP1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 CASQ2O14958 399 aaPredicted RBP1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 RDH16O75452 317 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 CTDNEP1O95476 244 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ARG1P05089 322 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 EIF4EP06730 217 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 CD3GP09693 182 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 IGHV1-8P0DP01 117 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ANXA8P13928 327 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ATF6P18850 670 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 TCN2P20062 427 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 HMOX2P30519 316 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 SEMG2Q02383 582 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 CDH17Q12864 832 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ITIH4Q14624 930 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 STK11Q15831 433 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ORMDL2Q53FV1 153 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ANXA8L1Q5VT79 327 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 CLEC2AQ6UVW9 174 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 TMEM205Q6UW68 189 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 C12orf54Q6X4T0 127 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 NTM-AS1Q6ZSK4 140 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ADAMTS13Q76LX8 1427 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF695Q8IW36 515 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 PRSS58Q8IYP2 241 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 NPWQ8N729 165 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 TTC29Q8NA56 475 aaPredicted RBP1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 OR10AD1Q8NGE0 317 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 OR5K2Q8NHB8 316 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 UBALD1Q8TB05 177 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 LRRC29Q8WV35 223 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 TMEM230Q96A57 120 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 PDXPQ96GD0 296 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 MTG1Q9BT17 334 aaPredicted RBP1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 TEKT3Q9BXF9 490 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 UCK2Q9BZX2 261 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ZYG11BQ9C0D3 744 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 SPNS1Q9H2V7 528 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF430Q9H8G1 570 aaPredicted RBP1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms