RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CD74P04233 296 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 KLK3P07288 261 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CST2P09228 141 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 UGT2B7P16662 529 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ZNF17P17021 662 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 AKR1C4P17516 323 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CD58P19256 250 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 OGNP20774 298 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 FASP25445 335 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CALML3P27482 149 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 GCAP28676 217 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SFTPDP35247 375 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 DCTP40126 519 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 LEPP41159 167 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 BDKRB1P46663 353 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 RAB7AP51149 207 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CCR6P51684 374 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 STC1P52823 247 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 RPS4XP62701 263 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 RPL32P62910 135 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ELF3P78545 371 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 DEFA6Q01524 100 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 PRKCDQ05655 676 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 FAM27E3Q08E93 113 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ST3GAL1Q11201 340 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC39A6Q13433 755 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 KIR2DS1Q14954 304 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CCDC6Q16204 474 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 TRMT5Q32P41 509 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ACSM5Q6NUN0 579 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 MED27Q6P2C8 311 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 TMEM64Q6YI46 380 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ASRGL1Q7L266 308 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 MRPL52Q86TS9 123 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 THOC6Q86W42 341 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 APOBEC3FQ8IUX4 373 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ZNF547Q8IVP9 402 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CMTM1Q8IZ96 169 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ABHD12Q8N2K0 398 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CENPSQ8N2Z9 138 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 DHRSXQ8N5I4 330 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ZSCAN4Q8NAM6 433 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 OR2M7Q8NG81 312 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 OR13D1Q8NGV5 346 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 RDH11Q8TC12 318 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 FAM45AQ8TCE6 357 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 C16orf78Q8WTQ4 265 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CCDC107Q8WV48 283 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 RAB8BQ92930 207 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 TESCQ96BS2 214 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 C12orf43Q96C57 262 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 OR10C1Q96KK4 312 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 KCTD7Q96MP8 289 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ZNF641Q96N77 438 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 NUDT9Q9BW91 350 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 YIPF3Q9GZM5 350 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 CCDC90BQ9GZT6 254 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 UBE2ZQ9H832 354 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 NT5DC2Q9H857 520 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 C6orf50Q9HD87 102 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 FGF20Q9NP95 211 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SPANXB1Q9NS25 103 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 FAIMQ9NVQ4 179 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC25A37Q9NYZ2 338 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 IL17CQ9P0M4 197 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 PRODH2Q9UF12 536 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 DKKL1Q9UK85 242 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 FBXO5Q9UKT4 447 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 HHLA2Q9UM44 414 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 UBQLN1Q9UMX0 589 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 MOKQ9UQ07 419 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 WDR81Q562E7 1941 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 PLEKHG1Q9ULL1 1385 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 PCF11O94913 1555 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 TRAV8-7A0A075B6U6 113 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 ANKRD20A5PA0PJZ0 165 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 EFCAB9A8MZ26 197 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 PRAC2D3DTV9 90 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 K7EP13 123 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 PLPP1O14494 284 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 TIMM23O14925 209 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 ARPC2O15144 300 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 SSNA1O43805 119 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 DCTN3O75935 186 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 OR2B3O76000 313 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 TOXO94900 526 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 OXTP01178 125 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 MT-ND4P03905 459 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 RBP1P09455 135 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 FAM228BP0C875 321 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 C1GALT1C1LP0DN25 315 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 ANOS1P23352 680 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 RPS12P25398 132 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 CCR7P32248 378 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 CA5AP35218 305 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 RPL3P39023 403 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 OPRD1P41143 372 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 RAP1BP61224 184 aa4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 NUTF2P61970 127 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-210ENST00000468534 NTHL1P78549 312 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms