RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CRYAAP02489 173 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 HMGN1P05114 100 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 ALPLP05186 524 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 CST2P09228 141 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 MMP7P09237 267 aaPredicted RBP10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 CECR9P0C854 216 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 PATE4P0C8F1 98 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF14P17017 642 aaPredicted RBP10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 SRP14P37108 136 aaKnown RBP10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 IDH3GP51553 393 aaPredicted RBP10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 RAB1AP62820 205 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 NPRL3Q12980 569 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 DAG1Q14118 895 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 ENDOGQ14249 297 aaKnown RBP10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 GGTLC2Q14390 218 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 PTGES3Q15185 160 aaKnown RBP10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 TMEM236Q5W0B7 351 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 TMEM53Q6P2H8 277 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 OR2T4Q8NH00 348 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 FGFBP3Q8TAT2 258 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 FOXN4Q96NZ1 517 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 KCNS3Q9BQ31 491 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 TEX12Q9BXU0 123 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 GABARAPL3Q9BY60 117 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 SRA1Q9HD15 236 aaKnown RBP10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 CCNB1IP1Q9NPC3 277 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 USE1Q9NZ43 259 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 FBXL3Q9UKT7 428 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 PMF1-BGLAPU3KQ54 211 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 NOTCH1P46531 2555 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 ZAR1LA6NP61 321 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 C12orf71A8MTZ7 269 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 VWC2LB2RUY7 222 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 ATP6V1G2-DDX39BF2Z307 99 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 SURF4O15260 269 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 SCG5P05408 212 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 CELA3BP08861 270 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 GAAP10253 952 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF32P17041 273 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 CENPAP49450 140 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 ALDH3A2P51648 485 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 SLC25A1P53007 311 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 LSM6P62312 80 aaKnown RBP10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 NAAAQ02083 359 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 HSF2Q03933 536 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 GLO1Q04760 184 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 RCN1Q15293 331 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 KCNMB1Q16558 191 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 SYT9Q86SS6 491 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 MYPOPQ86VE0 399 aaPredicted RBP10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 CBR4Q8N4T8 237 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 IL17RDQ8NFM7 739 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 SEMA6DQ8NFY4 1073 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 SLC26A10Q8NG04 563 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 OR9Q1Q8NGQ5 310 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 FBXO17Q96EF6 278 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 WACQ9BTA9 647 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF416Q9BWM5 594 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 NMNAT2Q9BZQ4 307 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 OCEL1Q9H607 264 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 RNF121Q9H920 327 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 EMC7Q9NPA0 242 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 METRNQ9UJH8 293 aa10.25□□□□□ -0.77
SQSTM1-206ENST00000466342 PRKDCP78527 4128 aaKnown RBP10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 FAM157AC9JC47 383 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 MPZL1O95297 269 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 GPANK1O95872 356 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 SERPINA5P05154 406 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 ANPEPP15144 967 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 PAICSP22234 425 aaKnown RBP10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 EPHA2P29317 976 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 PYCR1P32322 319 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 RAD23AP54725 363 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 PCBD1P61457 104 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 ELF3P78545 371 aaPredicted RBP10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 DBPQ10586 325 aaPredicted RBP10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 AQP6Q13520 282 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 RAB39AQ14964 217 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 SWI5Q1ZZU3 235 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 MST1LQ2TV78 715 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 SLX4IPQ5VYV7 408 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 UGT2A3Q6UWM9 527 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF584Q8IVC4 421 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 PROKR2Q8NFJ6 384 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 OR4F15Q8NGB8 312 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 C11orf40Q8WZ69 217 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 EME1Q96AY2 570 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 MS4A3Q96HJ5 214 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 PLEKHA8Q96JA3 519 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 PRRG3Q9BZD7 231 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 FBXO9Q9UK97 447 aaPredicted RBP10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 ORC6Q9Y5N6 252 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 ARFGEF3Q5TH69 2177 aa10.24□□□□□ -0.77
SQSTM1-206ENST00000466342 FAM183AA6NL82 134 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 VSTM5A8MXK1 200 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 PRR23D1E9PI22 279 aaPredicted RBP10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 NDUFS8O00217 210 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 TMPRSS2O15393 492 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 PTHP01270 115 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 HLA-DQA2P01906 255 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms