RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ZNF12P17014 697 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 CPT2P23786 658 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 PRTN3P24158 256 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 GPR4P46093 362 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 MTNR1AP48039 350 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 SLC6A9P48067 706 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 GPR139Q6DWJ6 353 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 BTNL3Q6UXE8 466 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 DOK3Q7L591 496 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 VASH1Q7L8A9 365 aaPredicted RBP12.97□□□□□ -0.33
SKA3-204ENST00000462482 VTCN1Q7Z7D3 282 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 SLC25A28Q96A46 364 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 Q96M85 177 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 OR2V2Q96R30 315 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 ZNF747Q9BV97 191 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 MS4A7Q9GZW8 240 aaPredicted RBP12.97□□□□□ -0.33
SKA3-204ENST00000462482 MMP26Q9NRE1 261 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 DCAF16Q9NXF7 216 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 IL20RAQ9UHF4 553 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 LRCH1Q9Y2L9 728 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 POLR3KQ9Y2Y1 108 aaPredicted RBP12.97□□□□□ -0.33
SKA3-204ENST00000462482 ADAM18Q9Y3Q7 739 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 INSIG2Q9Y5U4 225 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 A0A087WUU8 490 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 TEX13CA0A0J9YWL9 993 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 LRRC30A6NM36 301 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 J3KTA2 159 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 CXCR6O00574 342 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 SLC16A7O60669 478 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 SRP9P49458 86 aaKnown RBP12.96□□□□□ -0.33
SKA3-204ENST00000462482 LSM6P62312 80 aaKnown RBP12.96□□□□□ -0.33
SKA3-204ENST00000462482 SF3A3Q12874 501 aaKnown RBP eCLIP12.96□□□□□ -0.33
SKA3-204ENST00000462482 KRR1Q13601 381 aaKnown RBP12.96□□□□□ -0.33
SKA3-204ENST00000462482 ZMYND11Q15326 602 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 SPRNQ5BIV9 151 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 TMPRSS11FQ6ZWK6 438 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 GLB1L2Q8IW92 636 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 FAM156AQ8NDB6 213 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 OR13G1Q8NGZ3 307 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 OR1F12Q8NHA8 337 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 RASD2Q96D21 266 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 PLEKHA8Q96JA3 519 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 ZNF582Q96NG8 517 aaPredicted RBP12.96□□□□□ -0.33
SKA3-204ENST00000462482 ANKRD19PQ9H560 264 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 KRCC1Q9NPI7 259 aaPredicted RBP12.96□□□□□ -0.33
SKA3-204ENST00000462482 ASH2LQ9UBL3 628 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 ZNF69Q9UC07 566 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 FAM32AQ9Y421 112 aaKnown RBP12.96□□□□□ -0.33
SKA3-204ENST00000462482 SNX13Q9Y5W8 968 aa12.96□□□□□ -0.33
SKA3-204ENST00000462482 OR6C6A6NF89 314 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 DNAJC9-AS1A6NH13 148 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 A8MXK9 166 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 TRAPPC2LH3BP13 241 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 TMEM178BH3BS89 294 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 SLC22A2O15244 555 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 WIPF1O43516 503 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 NDUFB2O95178 105 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 SCG5P05408 212 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 RPS2P15880 293 aaKnown RBP12.95□□□□□ -0.34
SKA3-204ENST00000462482 CENPAP49450 140 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 LIPEQ05469 1076 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 MESTQ5EB52 335 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 PGM2L1Q6PCE3 622 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 DNM1P34Q6PK57 102 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 Q6ZR03 302 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 ADCK1Q86TW2 530 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 C1orf87Q8N0U7 546 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 OR5AS1Q8N127 324 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 OR52E2Q8NGJ4 325 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 RCN3Q96D15 328 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 POFUT1Q9H488 388 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 FGFR1OP2Q9NVK5 253 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 ATPIF1Q9UII2 106 aa12.95□□□□□ -0.34
SKA3-204ENST00000462482 CEACAM18A8MTB9 384 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 NDUFAB1O14561 156 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 SERPINA1P01009 418 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 IRF2P14316 349 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 CTLA4P16410 223 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 SDHAP31040 664 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 MMP16P51512 607 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 SEC61A1P61619 476 aaKnown RBP12.94□□□□□ -0.34
SKA3-204ENST00000462482 IL13RA1P78552 427 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 FHL1Q13642 323 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 FGD3Q5JSP0 725 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 TBPL2Q6SJ96 375 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 LRRN1Q6UXK5 716 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 CBLL1Q75N03 491 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 NLRC3Q7RTR2 1065 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 OR8G5Q8NG78 346 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 RP9Q8TA86 221 aaKnown RBP12.94□□□□□ -0.34
SKA3-204ENST00000462482 FAM162AQ96A26 154 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 APOBEC3DQ96AK3 386 aaPredicted RBP12.94□□□□□ -0.34
SKA3-204ENST00000462482 HSH2DQ96JZ2 352 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 DUX5Q96PT3 197 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 HOPXQ9BPY8 73 aaPredicted RBP12.94□□□□□ -0.34
SKA3-204ENST00000462482 SSBP3Q9BWW4 388 aaPredicted RBP12.94□□□□□ -0.34
SKA3-204ENST00000462482 SYT4Q9H2B2 425 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 NMNAT1Q9HAN9 279 aaPredicted RBP12.94□□□□□ -0.34
SKA3-204ENST00000462482 GCM1Q9NP62 436 aa12.94□□□□□ -0.34
SKA3-204ENST00000462482 CMTM6Q9NX76 183 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms