RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MRPL37Q9BZE1 423 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 PCDHAC1Q9H158 963 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 HEATR1Q9H583 2144 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 TAS2R5Q9NYW4 299 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 ZNF229Q9UJW7 825 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 PLCE1Q9P212 2302 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 ARFGEF3Q5TH69 2177 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 MALRD1Q5VYJ5 2156 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 SLC22A23A1A5C7 686 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 LRP5LA4QPB2 252 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 TRAPPC13A5PLN9 417 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 CENPBD1B2RD01 187 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 RNF13O43567 381 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 MGRN1O60291 552 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 EDF1O60869 148 aaKnown RBP6.2□□□□□ -1.42
USP54-208ENST00000461520 LYPD3O95274 346 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 FARS2O95363 451 aaKnown RBP6.2□□□□□ -1.42
USP54-208ENST00000461520 CH25HO95992 272 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 THY1P04216 161 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 HIST1H2ABP04908 130 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 SERPINA5P05154 406 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 ASAH2BP0C7U1 165 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 OR8G3PP0DMU2 310 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 PCMT1P22061 227 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 ACHEP22303 614 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 PCGF2P35227 344 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 GKAP1Q5VSY0 366 aaPredicted RBP6.2□□□□□ -1.42
USP54-208ENST00000461520 REP15Q6BDI9 236 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 IL17RELQ6ZVW7 336 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 CCDC80Q76M96 950 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 HIST3H2AQ7L7L0 130 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 DPPA2Q7Z7J5 298 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 RBM45Q8IUH3 476 aaKnown RBP6.2□□□□□ -1.42
USP54-208ENST00000461520 SKA3Q8IX90 412 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 SLC15A3Q8IY34 581 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 SLC22A24Q8N4F4 322 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 Q8N9P0 234 aaPredicted RBP6.2□□□□□ -1.42
USP54-208ENST00000461520 OR4D11Q8NGI4 311 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 OR10A6Q8NH74 314 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 HIST1H2ACQ93077 130 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 TAMM41Q96BW9 452 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 SH3GL1Q99961 368 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 C19orf24Q9BVV8 132 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 POLR2J2Q9GZM3 115 aaKnown RBP6.2□□□□□ -1.42
USP54-208ENST00000461520 POLR2J3Q9H1A7 115 aaKnown RBP6.2□□□□□ -1.42
USP54-208ENST00000461520 TPK1Q9H3S4 243 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 C1orf198Q9H425 327 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 MRGBPQ9NV56 204 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 SLC7A8Q9UHI5 535 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 SLC7A7Q9UM01 511 aa6.2□□□□□ -1.42
USP54-208ENST00000461520 KPNA4O00629 521 aaPredicted RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 DHHO43323 396 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 BCL10O95999 233 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 PTHP01270 115 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 IGF2P01344 180 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 IGHG1P01857 330 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 MT-ND1P03886 318 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 PATE4P0C8F1 98 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 PGA4P0DJD7 388 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 PGA3P0DJD8 388 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 UMPSP11172 480 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 IL2RGP31785 369 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 RBM34P42696 430 aaKnown RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 GZMMP51124 257 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 DVL1P1P54792 670 aaPredicted RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 CDH15P55291 814 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 TPTEP56180 551 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 TMEM33P57088 247 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 SELENOVP59797 346 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 MRPS11P82912 194 aaKnown RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 CYLC2Q14093 348 aaPredicted RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 MELKQ14680 651 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 TRIP10Q15642 601 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 HIST3H3Q16695 136 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 SLC36A2Q495M3 483 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 COQ5Q5HYK3 327 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 ELFN2Q5R3F8 820 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 LIPNQ5VXI9 398 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 MORN5Q5VZ52 161 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 NANOGP8Q6NSW7 305 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 HDDC2Q7Z4H3 204 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 NANOGNBQ7Z5D8 188 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 ZNF584Q8IVC4 421 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 RFLNBQ8N5W9 214 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 LRRC17Q8N6Y2 441 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 VANGL1Q8TAA9 524 aaPredicted RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 FGFBP3Q8TAT2 258 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 RDH5Q92781 318 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 THOC1Q96FV9 657 aaKnown RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 SNX18Q96RF0 628 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 PRSS27Q9BQR3 290 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 MRPL13Q9BYD1 178 aaKnown RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 VIPAS39Q9H9C1 493 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 NANOGQ9H9S0 305 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 MEPEQ9NQ76 525 aaPredicted RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 TMEM38BQ9NVV0 291 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 STX18Q9P2W9 335 aaKnown RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 BAG5Q9UL15 447 aa6.19□□□□□ -1.42
USP54-208ENST00000461520 ZNF346Q9UL40 294 aaKnown RBP6.19□□□□□ -1.42
USP54-208ENST00000461520 IGLV3-9A0A075B6K5 115 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms