RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, human

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDC42BPA-208	ENST00000442054	MED30	Q96HR3	178 aa		6.57	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR11A1	Q9GZK7	315 aa		6.57	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ENAM	Q9NRM1	1142 aa		6.57	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	GSTK1	Q9Y2Q3	226 aa		6.57	□□□□□ -1.36
CDC42BPA-208	ENST00000442054		A0A1W2PRG6	482 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	UNC119B	A6NIH7	251 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	DNASE1	P24855	282 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	HTR2B	P41595	481 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	SRP9	P49458	86 aa	Known RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	FCN2	Q15485	313 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR1Q1	Q15612	314 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	LGALSL	Q3ZCW2	172 aa	Predicted RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	PLBD1	Q6P4A8	553 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	TEX261	Q6UWH6	196 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	NPSR1	Q6W5P4	371 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	BEND4	Q6ZU67	534 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR52L1	Q8NGH7	329 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	SMAP2	Q8WU79	429 aa	Predicted RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ADIPOR1	Q96A54	375 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CMTM3	Q96MX0	182 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ACKR4	Q9NPB9	350 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	B3GNT2	Q9NY97	397 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	PIPOX	Q9P0Z9	390 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	MALT1	Q9UDY8	824 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054		U3KQ87	197 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	MEIKIN	A0A087WXM9	373 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	PINLYP	A6NC86	204 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	RAD51D	O75771	328 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	EPX	P11678	715 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	FKBP2	P26885	142 aa	Known RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	SSTR2	P30874	369 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	MNDA	P41218	407 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	GCGR	P47871	477 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ZNF84	P51523	738 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	SUMO3	P55854	103 aa	Predicted RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CLRN1	P58418	232 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	BIVM	Q86UB2	503 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ELMOD2	Q8IZ81	293 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ACBD7	Q8N6N7	88 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	LRRC75A	Q8NAA5	344 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR2M3	Q8NG83	312 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR52N5	Q8NH56	324 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	NANOS1	Q8WY41	292 aa	Known RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	WNT2B	Q93097	391 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	MAP6	Q96JE9	813 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	LAT2	Q9GZY6	243 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	POLE3	Q9NRF9	147 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	MRPL39	Q9NYK5	338 aa	Known RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	FOXD3	Q9UJU5	478 aa	Predicted RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	FBXL3	Q9UKT7	428 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	GTF2A1L	Q9UNN4	478 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	RASD1	Q9Y272	281 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	SPEF1	Q9Y4P9	236 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ATP23	Q9Y6H3	246 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	TRAPPC13	A5PLN9	417 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	FABP7	O15540	132 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	PNMT	P11086	282 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	PITPNB	P48739	271 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	MADCAM1	Q13477	382 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	RNPS1	Q15287	305 aa	Known RBP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	SGCA	Q16586	387 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	LINC01590	Q5TEZ4	76 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CD276	Q5ZPR3	534 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CBLN3	Q6UW01	205 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ZNF767P	Q75MW2	155 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR13C5	Q8NGS8	318 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	TMEM171	Q8WVE6	324 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	AKAP1	Q92667	903 aa	Known RBP eCLIP	6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	PELI1	Q96FA3	418 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	REG4	Q9BYZ8	158 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CACNG2	Q9Y698	323 aa		6.56	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	HMGN1	P05114	100 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ASCL1	P50553	236 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	AP2S1	P53680	142 aa	Predicted RBP	6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CLDN17	P56750	224 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR12D2	P58182	307 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ZNF117	Q03924	483 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	HSD17B12	Q53GQ0	312 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	RNFT1	Q5M7Z0	435 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	FNDC7	Q5VTL7	733 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	HIST2H2BC	Q6DN03	193 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	GPR139	Q6DWJ6	353 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	H3F3C	Q6NXT2	135 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	RFPL4B	Q6ZWI9	263 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	KDM8	Q8N371	416 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	STEAP2	Q8NFT2	490 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR51G2	Q8NGK0	314 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	TMEM239	Q8WW34	195 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	ZFP3	Q96NJ6	502 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	VRK1	Q99986	396 aa	Predicted RBP	6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	LMF2	Q9BU23	707 aa	Known RBP	6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	CLEC4M	Q9H2X3	399 aa	Predicted RBP	6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	FKRP	Q9H9S5	495 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	EXTL2	Q9UBQ6	330 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	HELZ2	Q9BYK8	2649 aa	Known RBP	6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	DSP	P15924	2871 aa	Known RBP	6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	LINC00854	A0A1B0GVQ3	168 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	OR6C65	A6NJZ3	312 aa		6.55	□□□□□ -1.36
CDC42BPA-208	ENST00000442054	SNTN	A6NMZ2	147 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms