RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 HCAR1Q9BXC0 346 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 NMNAT2Q9BZQ4 307 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 OR51V1Q9H2C8 321 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 MYEF2Q9P2K5 600 aaKnown RBP16.04■□□□□ 0.16
SHH-204ENST00000441114 OAZ3Q9UMX2 235 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 PRR23D1E9PI22 279 aaPredicted RBP16.03■□□□□ 0.16
SHH-204ENST00000441114 H3BNX3 289 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 SURF4O15260 269 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 SYNGR3O43761 229 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 ABHD16AO95870 558 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 NGFP01138 241 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 HMGN1P05114 100 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 ADRA2AP08913 450 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 DBHP09172 617 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 PRR23D2P0DMB1 279 aaPredicted RBP16.03■□□□□ 0.16
SHH-204ENST00000441114 PAICSP22234 425 aaKnown RBP16.03■□□□□ 0.16
SHH-204ENST00000441114 ALDH3B1P43353 468 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 MAD2L1BPQ15013 274 aaPredicted RBP16.03■□□□□ 0.16
SHH-204ENST00000441114 ELFN2Q5R3F8 820 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 SLC18B1Q6NT16 456 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 ZFP1Q6P2D0 407 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 PLBD1Q6P4A8 553 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 CFAP77Q6ZQR2 320 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 PITX2Q99697 317 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 TMUB1Q9BVT8 246 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 TEX12Q9BXU0 123 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 TPK1Q9H3S4 243 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 WDR76Q9H967 626 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 TVP23BQ9NYZ1 205 aa16.03■□□□□ 0.16
SHH-204ENST00000441114 MED13LQ71F56 2210 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 SMAD7O15105 426 aaKnown RBP16.02■□□□□ 0.16
SHH-204ENST00000441114 SPARCP09486 303 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 GGT2P36268 569 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 PPOXP50336 477 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 KLF3P57682 345 aaPredicted RBP16.02■□□□□ 0.16
SHH-204ENST00000441114 SELENOVP59797 346 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 PPP1CBP62140 327 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 HIST1H3AP68431 136 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 PTGES3Q15185 160 aaKnown RBP16.02■□□□□ 0.16
SHH-204ENST00000441114 HIST2H3PS2Q5TEC6 136 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 ARL9Q6T311 187 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 UNQ6126/PRO20091Q6UXV3 157 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 RFPL4BQ6ZWI9 263 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 HIST2H3AQ71DI3 136 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 C10orf67Q8IYJ2 551 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 SLC25A40Q8TBP6 338 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 PTP4A1Q93096 173 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 GABARAPL1Q9H0R8 117 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 RAB1BQ9H0U4 201 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 ELOVL3Q9HB03 270 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 SLC25A19Q9HC21 320 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 TAAR3PQ9P1P4 343 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 CYB5R1Q9UHQ9 305 aa16.02■□□□□ 0.16
SHH-204ENST00000441114 ITPR3Q14573 2671 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 OR6C6A6NF89 314 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 H7C1Q1 480 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 F12P00748 615 aaPredicted RBP16.01■□□□□ 0.15
SHH-204ENST00000441114 IGFBP5P24593 272 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 GCH1P30793 250 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 EVX1P49640 407 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 EFNA4P52798 201 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 ESRRGP62508 458 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 TNK1Q13470 666 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 SNAPC1Q16533 368 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 NKPD1Q17RQ9 610 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 ZNF718Q3SXZ3 478 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 KLHL12Q53G59 568 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 KDM4DQ6B0I6 523 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 CPOQ8IVL8 374 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 PARP8Q8N3A8 854 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 ZNF525Q8N782 197 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 OR2J1Q9GZK6 312 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 HDHD2Q9H0R4 259 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 COMMD3-BMI1R4GMX3 469 aa16.01■□□□□ 0.15
SHH-204ENST00000441114 M0R233 179 aa16■□□□□ 0.15
SHH-204ENST00000441114 ZNF593O00488 134 aaPredicted RBP16■□□□□ 0.15
SHH-204ENST00000441114 NAT2P11245 290 aa16■□□□□ 0.15
SHH-204ENST00000441114 PSKH1P11801 424 aa16■□□□□ 0.15
SHH-204ENST00000441114 ZNF250P15622 560 aa16■□□□□ 0.15
SHH-204ENST00000441114 MPV17P39210 176 aa16■□□□□ 0.15
SHH-204ENST00000441114 ENTPD1P49961 510 aa16■□□□□ 0.15
SHH-204ENST00000441114 CARTPTQ16568 116 aa16■□□□□ 0.15
SHH-204ENST00000441114 ERI1Q8IV48 349 aaKnown RBP16■□□□□ 0.15
SHH-204ENST00000441114 CIARTQ8N365 385 aaPredicted RBP16■□□□□ 0.15
SHH-204ENST00000441114 ZMYND19Q96E35 227 aaPredicted RBP16■□□□□ 0.15
SHH-204ENST00000441114 MARS2Q96GW9 593 aaKnown RBP16■□□□□ 0.15
SHH-204ENST00000441114 MAP6Q96JE9 813 aa16■□□□□ 0.15
SHH-204ENST00000441114 COQ7Q99807 217 aa16■□□□□ 0.15
SHH-204ENST00000441114 CIB1Q99828 191 aa16■□□□□ 0.15
SHH-204ENST00000441114 POFUT1Q9H488 388 aa16■□□□□ 0.15
SHH-204ENST00000441114 S100A14Q9HCY8 104 aa16■□□□□ 0.15
SHH-204ENST00000441114 HINT3Q9NQE9 182 aaKnown RBP16■□□□□ 0.15
SHH-204ENST00000441114 KCNG2Q9UJ96 466 aa16■□□□□ 0.15
SHH-204ENST00000441114 FBXO9Q9UK97 447 aaPredicted RBP16■□□□□ 0.15
SHH-204ENST00000441114 CHD3Q12873 2000 aaKnown RBP16■□□□□ 0.15
SHH-204ENST00000441114 F5H5K5 113 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 GLCEO94923 617 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 ERCC1P07992 297 aaPredicted RBP15.99■□□□□ 0.15
SHH-204ENST00000441114 EPHA2P29317 976 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 GSTT1P30711 240 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms