RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CADM2Q8N3J6 435 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ANKFN1Q8N957 763 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 Q8N9G6 341 aaPredicted RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 OR4F5Q8NH21 305 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CLHC1Q8NHS4 586 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 PCNPQ8WW12 178 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ELMO1Q92556 727 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 OSTF1Q92882 214 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 C9orf72Q96LT7 481 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF597Q96LX8 424 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 PPP3R2Q96LZ3 170 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 FOPNLQ96NB1 174 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 F2RL3Q96RI0 385 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 PLIN2Q99541 437 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 TCEAL7Q9BRU2 100 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 LRRC61Q9BV99 259 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 GSDMCQ9BYG8 508 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 RACGAP1Q9H0H5 632 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 VCX2Q9H322 139 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 OR51M1Q9H341 326 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ALG9Q9H6U8 611 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 SMYD3Q9H7B4 428 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 NANOGQ9H9S0 305 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 MCCC2Q9HCC0 563 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 APMAPQ9HDC9 416 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 B3GAT2Q9NPZ5 323 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ABCC13Q9NSE7 274 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 FAM49BQ9NUQ9 324 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 THYN1Q9P016 225 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ABCD2Q9UBJ2 740 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 RWDD2AQ9UIY3 292 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 PSME2Q9UL46 239 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CLEC4EQ9ULY5 219 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 COPS3Q9UNS2 423 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 NYNRINQ9P2P1 1898 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 UTP20O75691 2785 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ABCA2Q9BZC7 2435 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 MYOFQ9NZM1 2061 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ADGRG4Q8IZF6 3080 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 FAM240BA0A1B0GVZ2 78 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 RAB19A4D1S5 217 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF879B4DU55 563 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 F5H5T6 163 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 H0YL77 283 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 DNALI1O14645 258 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 CST8O60676 142 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 SNNO75324 88 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 NDUFS6O75380 124 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 CBR3O75828 277 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 UPK1BO75841 260 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 TSPAN12O95859 305 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PLEKP08567 350 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PSKH1P11801 424 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PRPS2P11908 318 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 BCKDHAP12694 445 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 IL7P13232 177 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 COX6B1P14854 86 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF44P15621 663 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 NT5EP21589 574 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 GCAP28676 217 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 DLSTP36957 453 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 HTR5AP47898 357 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 SERPINB10P48595 397 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ATP5IP56385 69 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 TAS2R60P59551 318 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 SNRPFP62306 86 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 RPL23AP62750 156 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 GNB1P62873 340 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ZFP36L1Q07352 338 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 STX5Q13190 355 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 DDX39BQ13838 428 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 FZD2Q14332 565 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ARHGAP19Q14CB8 494 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 CHRNA6Q15825 494 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 TMEM44Q2T9K0 475 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 HSD17B12Q53GQ0 312 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ADAMTSL4-AS1Q5T5F5 129 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PTRHD1Q6GMV3 140 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 TMEM225Q6GV28 225 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 DCUN1D2Q6PH85 259 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 Q6ZSR9 355 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PRSS48Q7RTY5 328 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 LINC00523Q86TU6 105 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 TAC4Q86UU9 113 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 TCTE3Q8IZS6 198 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PACRGLQ8N7B6 248 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 NUP37Q8NFH4 326 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 OR5B17Q8NGF7 314 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 RNASE11Q8TAA1 199 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 AGR3Q8TD06 166 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 MAGEE2Q8TD90 523 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PHF10Q8WUB8 498 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 DNAJA4Q8WW22 397 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ADIPOR1Q96A54 375 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PPWD1Q96BP3 646 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 UPRTQ96BW1 309 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 SGTBQ96EQ0 304 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 DUS3LQ96G46 650 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ELMO2Q96JJ3 720 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PRAC1Q96KF2 57 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms