RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ZNF519Q8TB69 540 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 DVL3Q92997 716 aaPredicted RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 FAM3DQ96BQ1 224 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 WDR89Q96FK6 387 aaPredicted RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 USB1Q9BQ65 265 aaKnown RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 ABHD6Q9BV23 337 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 EMC3Q9P0I2 261 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 VDAC3Q9Y277 283 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 GVINP1Q7Z2Y8 2422 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 IGLV1-36A0A0B4J1U3 117 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 A0A1W2PQD3 144 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 PLPP3O14495 311 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 NDUFB6O95139 128 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 JMJD7P0C870 316 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 FAUP35544 74 aaKnown RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 RIDAP52758 137 aaKnown RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 PNLIPRP2P54317 469 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 FBXW4P57775 412 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 EXOSC2Q13868 293 aaKnown RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 C2orf76Q3KRA6 126 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 NHLRC1Q6VVB1 395 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 RAB11FIP2Q7L804 512 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 DEFB124Q8NES8 71 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 C15orf40Q8WUR7 153 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 ASB17Q8WXJ9 295 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 MARVELD3Q96A59 401 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 GPN1Q9HCN4 374 aaPredicted RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 ZNF275Q9NSD4 429 aaPredicted RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 TAS2R4Q9NYW5 299 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 CKLFQ9UBR5 152 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 CGGBP1Q9UFW8 167 aaPredicted RBP9.56□□□□□ -0.88
CUX1-205ENST00000425244 FBXL3Q9UKT7 428 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 EMC9Q9Y3B6 208 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 LOXL2Q9Y4K0 774 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 LRP12Q9Y561 859 aa9.56□□□□□ -0.88
CUX1-205ENST00000425244 DCDC2BA2VCK2 349 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 G3V3Q6 166 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 M0R233 179 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 EIF1AYO14602 144 aaKnown RBP9.55□□□□□ -0.88
CUX1-205ENST00000425244 TO15178 435 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 TMEM127O75204 238 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 SIX6O95475 246 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 KLK3P07288 261 aaPredicted RBP9.55□□□□□ -0.88
CUX1-205ENST00000425244 GLO1Q04760 184 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 IL11RAQ14626 422 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 OR7A5Q15622 319 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 GRK1Q15835 563 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 ESCO2Q56NI9 601 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 ANKRD16Q6P6B7 361 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 KCTD18Q6PI47 426 aaPredicted RBP9.55□□□□□ -0.88
CUX1-205ENST00000425244 ZNF627Q7L945 461 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 NUP54Q7Z3B4 507 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 BIVMQ86UB2 503 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 RNF128Q8TEB7 428 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 CCDC120Q96HB5 630 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 SORCS2Q96PQ0 1159 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 CEP250Q9BV73 2442 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 FAM186AA6NE01 2351 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 SHISA8B8ZZ34 492 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 H7C417 338 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 FADS1O60427 444 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 NPIPB7O75200 414 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 SCO1O75880 301 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 DXOO77932 396 aaKnown RBP9.55□□□□□ -0.88
CUX1-205ENST00000425244 CFDP00746 253 aaPredicted RBP9.55□□□□□ -0.88
CUX1-205ENST00000425244 IFNA7P01567 189 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 CD2P06729 351 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 SPOCK1Q08629 439 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 TRIP6Q15654 476 aaKnown RBP9.55□□□□□ -0.88
CUX1-205ENST00000425244 TMEM225Q6GV28 225 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 LRFN4Q6PJG9 635 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 CORO6Q6QEF8 472 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 ZNF248Q8NDW4 579 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 SLC22A8Q8TCC7 542 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 ELMOD3Q96FG2 381 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 ARL5BQ96KC2 179 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 CRB3Q9BUF7 120 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 NPDC1Q9NQX5 325 aaPredicted RBP9.55□□□□□ -0.88
CUX1-205ENST00000425244 MTFP1Q9UDX5 166 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 NPTNQ9Y639 398 aa9.55□□□□□ -0.88
CUX1-205ENST00000425244 LOC100289279A0A1B0GTE1 492 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 NPIPA5E9PKD4 350 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 VSIG10L2P0DP72 767 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 FGF5P12034 268 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 IFNGR1P15260 489 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 ZNF823P16415 610 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 CSRP1P21291 193 aaKnown RBP9.54□□□□□ -0.88
CUX1-205ENST00000425244 PRSS3P35030 304 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 EIF1AXP47813 144 aaKnown RBP9.54□□□□□ -0.88
CUX1-205ENST00000425244 DNASE1L1P49184 302 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 SLC26A5P58743 744 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 GPR85P60893 370 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 RNF4P78317 190 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 PUDPQ08623 228 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 TRA2AQ13595 282 aaKnown RBP eCLIP9.54□□□□□ -0.88
CUX1-205ENST00000425244 CSRP2Q16527 193 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 GLYATL3Q5SZD4 288 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 ASPHD2Q6ICH7 369 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 JAGN1Q8N5M9 183 aa9.54□□□□□ -0.88
CUX1-205ENST00000425244 OR51A2Q8NGJ7 313 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms