RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 AK9Q5TCS8 1911 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF142P52746 1687 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ABCA6Q8N139 1617 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 VWDEQ8N2E2 1590 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 CEP170BQ9Y4F5 1589 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 PLEKHH1Q9ULM0 1364 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ABCB11O95342 1321 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 A0A1W2PQ67 120 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 SRRM3A6NNA2 597 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 LAD1O00515 517 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 MAGEC1O60732 1142 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 NOS1APO75052 506 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ALOX12BO75342 701 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 TRAPPC6AO75865 159 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 LSM8O95777 96 aaKnown RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 CRYZL1O95825 349 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 CLIC3O95833 236 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 TSHBP01222 138 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 IFNA5P01569 189 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 FGF1P05230 155 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 SELEP16581 610 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 HTR1FP30939 366 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 CEACAM8P31997 349 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ELK3P41970 407 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 TSFMP43897 325 aaKnown RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 OMPP47874 163 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 GLUD2P49448 558 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ERFP50548 548 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 RIDAP52758 137 aaKnown RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 NKX2-5P52952 324 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 DLX5P56178 289 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 OR2B8PP59922 312 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 PSME3P61289 254 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ERVS71-1P61550 626 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 FCHO2Q0JRZ9 810 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 SLC39A6Q13433 755 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ZIC1Q15915 447 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 VAX1Q5SQQ9 334 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 NR2C2APQ86WQ0 139 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 RALGPS2Q86X27 583 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 PRSS58Q8IYP2 241 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 HS3ST5Q8IZT8 346 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 PDIK1LQ8N165 341 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 MREGQ8N565 214 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ACOT4Q8N9L9 421 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 CCDC71LQ8N9Z2 235 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 OR4K2Q8NGD2 314 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 LNX1Q8TBB1 728 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 NEK7Q8TDX7 302 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 PYROXD1Q8WU10 500 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 DNASE2BQ8WZ79 361 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 RASL10AQ92737 203 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 HGDQ93099 445 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 YIPF6Q96EC8 236 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 HSFY1Q96LI6 401 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 EBNA1BP2Q99848 306 aaKnown RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 C6orf106Q9H6K1 298 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 XPNPEP1Q9NQW7 623 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 ARMC1Q9NVT9 282 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 PAK1IP1Q9NWT1 392 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-204ENST00000399489 GID8Q9NWU2 228 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 SLC25A37Q9NYZ2 338 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 VAPAQ9P0L0 249 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 MDFICQ9P1T7 246 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 MUTYHQ9UIF7 546 aa3.38□□□□□ -1.87
HMGB1-204ENST00000399489 TCF20Q9UGU0 1960 aaKnown RBP3.37□□□□□ -1.87
HMGB1-204ENST00000399489 TRAV8-7A0A075B6U6 113 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 SEC14L6B5MCN3 397 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 M0R036 132 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 PDHXO00330 501 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MRPS12O15235 138 aaKnown RBP3.37□□□□□ -1.87
HMGB1-204ENST00000399489 PI15O43692 258 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 TYROBPO43914 113 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 CEACAM4O75871 244 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 IGKV3-20P01619 116 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 IGHV2-5P01817 119 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 SERPINB2P05120 415 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 BCL3P20749 454 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 ME2P23368 584 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 CXCR2P25025 360 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 FCGR2CP31995 323 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MAGEA3P43357 314 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 ATP4BP51164 291 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 P2RY4P51582 365 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 PRELPP51888 382 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 HNRNPA3P51991 378 aaKnown RBP3.37□□□□□ -1.87
HMGB1-204ENST00000399489 CRYBA2P53672 197 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 STX4Q12846 297 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 PDIA2Q13087 525 aaKnown RBP3.37□□□□□ -1.87
HMGB1-204ENST00000399489 PSMD5Q16401 504 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 GPRC6AQ5T6X5 926 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 IRAK1BP1Q5VVH5 260 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 TRIM40Q6P9F5 258 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 LRRN1Q6UXK5 716 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 APOOLQ6UXV4 268 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 MTURNQ8N3F0 131 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 TMEM251Q8N6I4 163 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 KLHDC9Q8NEP7 349 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 OR2T11Q8NH01 316 aa3.37□□□□□ -1.87
HMGB1-204ENST00000399489 OR51A7Q8NH64 312 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms