RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NAP1L6A6NFF2 107 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 STK11Q15831 433 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 MRPL14Q6P1L8 145 aaKnown RBP11.92□□□□□ -0.5
CCDC3-202ENST00000378839 SLC36A1Q7Z2H8 476 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 SOX7Q9BT81 388 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 CHST6Q9GZX3 395 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 ZMAT3Q9HA38 289 aaKnown RBP11.92□□□□□ -0.5
CCDC3-202ENST00000378839 AKAP7Q9P0M2 348 aaPredicted RBP11.92□□□□□ -0.5
CCDC3-202ENST00000378839 PPP4R1LQ9P1A2 415 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 TEX51A0A1B0GUA7 166 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 PATE3B3GLJ2 98 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ATP6V1G2-DDX39BF2Z307 99 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ONECUT2O95948 504 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 NAT2P11245 290 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 PRKACAP17612 351 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 CDAP32320 146 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 BLVRAP53004 296 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 UBE2MP61081 183 aaKnown RBP11.91□□□□□ -0.5
CCDC3-202ENST00000378839 MRPS10P82664 201 aaKnown RBP11.91□□□□□ -0.5
CCDC3-202ENST00000378839 C5orf46Q6UWT4 87 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF454Q8N9F8 522 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 OR4D6Q8NGJ1 314 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 OR2T35Q8NGX2 323 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 DDIT4LQ96D03 193 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 RASL10BQ96S79 203 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ATG5Q9H1Y0 275 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 CENPMQ9NSP4 180 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 FAM206AQ9NX38 181 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 KCNN3Q9UGI6 736 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 WIF1Q9Y5W5 379 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 TMEM269A0A1B0GVZ9 245 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 LDLRAD4O15165 306 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 CD3DP04234 171 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 MECP2P51608 486 aaKnown RBP11.91□□□□□ -0.5
CCDC3-202ENST00000378839 SCAND1P57086 179 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 AP3S2P59780 193 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 SLC25A53Q5H9E4 307 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ZBTB37Q5TC79 503 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 TEX261Q6UWH6 196 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 CFAP77Q6ZQR2 320 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF248Q8NDW4 579 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 OR2M3Q8NG83 312 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 OR13C3Q8NGS6 347 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 OR8S1Q8NH09 359 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ZC4H2Q9NQZ6 224 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 U3KQ87 197 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 A6NIZ1 184 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 CFDP00746 253 aaPredicted RBP11.91□□□□□ -0.5
CCDC3-202ENST00000378839 TPOP07202 933 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF823P16415 610 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 DAP3P51398 398 aaKnown RBP11.91□□□□□ -0.5
CCDC3-202ENST00000378839 SUMO3P55854 103 aaPredicted RBP11.91□□□□□ -0.5
CCDC3-202ENST00000378839 RAP1BP61224 184 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 RAP1AP62834 184 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 PRAMEF20Q5VT98 475 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 RNF133Q8WVZ7 376 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 TTC9Q92623 222 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 SORCS2Q96PQ0 1159 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF69Q9UC07 566 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 CYB5R1Q9UHQ9 305 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 SLC5A6Q9Y289 635 aa11.91□□□□□ -0.5
CCDC3-202ENST00000378839 IGLV3-32A0A0A0MS00 114 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 TTLL8A6PVC2 850 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 RBBP9O75884 186 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 TTRP02766 147 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ISG15P05161 165 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 FSTP19883 344 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 DNASE1P24855 282 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 HTR2CP28335 458 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 PMS2CLQ68D20 193 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF626Q68DY1 528 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 PPP1R3BQ86XI6 285 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 OR51S1Q8NGJ8 323 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 DUSP23Q9BVJ7 150 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 FANCFQ9NPI8 374 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ALKBH4Q9NXW9 302 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 SCP2D1Q9UJQ7 156 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 CHCHD2Q9Y6H1 151 aaPredicted RBP11.9□□□□□ -0.5
CCDC3-202ENST00000378839 CELSR3Q9NYQ7 3312 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 RALGAPA1Q6GYQ0 2036 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 A0A1W2PNV4 684 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 AQP8O94778 261 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ACSM4P0C7M7 580 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 PHF19Q5T6S3 580 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 METTL11BQ5VVY1 283 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 CLEC1AQ8NC01 280 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF680Q8NEM1 530 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 GPX8Q8TED1 209 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ST8SIA2Q92186 375 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 SEH1LQ96EE3 360 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ADAT3Q96EY9 351 aaPredicted RBP11.9□□□□□ -0.5
CCDC3-202ENST00000378839 POTEKPQ9BYX7 375 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 PTGES2Q9H7Z7 377 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 METTL7AQ9H8H3 244 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 LHFPL6Q9Y693 200 aa11.9□□□□□ -0.5
CCDC3-202ENST00000378839 ZFAND5O76080 213 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 UMODP07911 640 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 PCOLCEQ15113 449 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF782Q6ZMW2 699 aaPredicted RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 FGGYQ96C11 551 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms