RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 C4orf36Q96KX1 117 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 TGM7Q96PF1 710 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ADOQ96SZ5 270 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ALG8Q9BVK2 526 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ANGPTL4Q9BY76 406 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 TP63Q9H3D4 680 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 KCNK15Q9H427 330 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 NANSQ9NR45 359 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 BABAM2Q9NXR7 383 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 B3GNT2Q9NY97 397 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CALML5Q9NZT1 146 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ZNF581Q9P0T4 197 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OR5V1Q9UGF6 321 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 POU2F3Q9UKI9 436 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 FOXJ3Q9UPW0 622 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 PRKDCP78527 4128 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 CEP295Q9C0D2 2601 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SVILO95425 2214 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IGKV1-27A0A075B6S5 117 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 A1L4Q6 167 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 TMEM247A6NEH6 219 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CDRT15L2A8MXV6 281 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SCO2O43819 266 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IDH3BO43837 385 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SSX5O60225 188 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IGHG1P01857 330 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 EIF2S1P05198 315 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 EEF1B2P24534 225 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 CCKBRP32239 447 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 AQP2P41181 271 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IDH2P48735 452 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 TPD52P55327 224 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 CDC42P60953 191 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ILF3Q12906 894 aaKnown RBP eCLIP2.02□□□□□ -2.094e-9■■■■□ 23.7
VPS54-202ENST00000354504 ENDOGQ14249 297 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 SGCBQ16585 318 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 HYAL4Q2M3T9 481 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 GPAT3Q53EU6 434 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 YIF1BQ5BJH7 314 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 RNASE12Q5GAN4 147 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 C10orf128Q5T292 105 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OTPQ5XKR4 325 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OLFML2AQ68BL7 652 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 HBMQ6B0K9 141 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 WBP2NLQ6ICG8 309 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SLC18B1Q6NT16 456 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 HSDL2Q6YN16 418 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CFAP77Q6ZQR2 320 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 UBALD2Q8IYN6 164 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SAMD14Q8IZD0 417 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 OR5AS1Q8N127 324 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SLC34A3Q8N130 599 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 MINDY2Q8NBR6 621 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SDR9C7Q8NEX9 313 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 Q8NFD4 153 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OR5W2Q8NH69 310 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OTOSQ8NHW6 89 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 B4GALNT2Q8NHY0 566 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 FGFBP3Q8TAT2 258 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SETD6Q8TBK2 473 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ASB5Q8WWX0 329 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CMTM3Q96MX0 182 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 RASL10BQ96S79 203 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ELOVL1Q9BW60 279 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SRXN1Q9BYN0 137 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CTDSP1Q9GZU7 261 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 KCNN2Q9H2S1 579 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 LIME1Q9H400 295 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 C11orf1Q9H5F2 150 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 PLSCR3Q9NRY6 295 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IRAK4Q9NWZ3 460 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 DNAJB11Q9UBS4 358 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 B9D1Q9UPM9 204 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 NCKAP1Q9Y2A7 1128 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ZNF337Q9Y3M9 751 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 MRPS18BQ9Y676 258 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 ZNF780BQ9Y6R6 833 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 DNAH9Q9NYC9 4486 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 KMT2BQ9UMN6 2715 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 LNP1A1A4G5 178 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 GAGE12BA1L429 117 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 GAGE12HA6NDE8 117 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OR6C65A6NJZ3 312 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 A8MU76 341 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ZNF264O43296 627 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CDC40O60508 579 aaKnown RBP eCLIP2.02□□□□□ -2.09
VPS54-202ENST00000354504 GMDSO60547 372 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 EIF4E2O60573 245 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 REM1O75628 298 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 NEURL1O76050 574 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 AQP8O94778 261 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IFNA14P01570 189 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 GP1BAP07359 652 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 RFPL3SP0C7P2 107 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OR2T7P0C7T2 308 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SP9P0CG40 484 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CCL4P13236 92 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 PPIFP30405 207 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 RCVRNP35243 200 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IFNGR2P38484 337 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms