RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 NRARPQ7Z6K4 114 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SPACA5Q96QH8 159 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SNX18Q96RF0 628 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SIGLEC11Q96RL6 698 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 C20orf141Q9NUB4 165 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 MLXQ9UH92 298 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 IFNA1P01562 189 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 HNRNPFP52597 415 aaKnown RBP13.46□□□□□ -0.25
COL17A1-201ENST00000353479 CATR1Q13166 79 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SLC17A1Q14916 467 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SYS1Q8N2H4 156 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 REEP6Q96HR9 211 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 OPALINQ96PE5 141 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 PBOV1Q9GZY1 135 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 PLEKHA3Q9HB20 300 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SLCO1C1Q9NYB5 712 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 LTBP1Q14766 1721 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SPAG17Q6Q759 2223 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 ALG1L2C9J202 215 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 PEBP1P30086 187 aaKnown RBP13.46□□□□□ -0.26
COL17A1-201ENST00000353479 RPP30P78346 268 aaKnown RBP13.46□□□□□ -0.26
COL17A1-201ENST00000353479 FZD5Q13467 585 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 B3GNTL1Q67FW5 361 aaPredicted RBP13.46□□□□□ -0.26
COL17A1-201ENST00000353479 TMEM43Q9BTV4 400 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 BARHL1Q9BZE3 327 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 R4GMQ9 66 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 RNF212BA8MTL3 300 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 ZNF705EA8MWA4 302 aaPredicted RBP13.46□□□□□ -0.26
COL17A1-201ENST00000353479 EFSO43281 561 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 SOX18P35713 384 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 RPL23AP62750 156 aaKnown RBP13.46□□□□□ -0.26
COL17A1-201ENST00000353479 RAB31Q13636 194 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 OR51F2Q8NH61 342 aa13.46□□□□□ -0.26
COL17A1-201ENST00000353479 ISG20L2Q9H9L3 353 aaKnown RBP13.46□□□□□ -0.26
COL17A1-201ENST00000353479 EBPQ15125 230 aaKnown RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 GDPD3Q7L5L3 318 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 DMBX1Q8NFW5 382 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 AKR7LQ8NHP1 331 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 SUN5Q8TC36 379 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 DEDD2Q8WXF8 326 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 KISS1RQ969F8 398 aaPredicted RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 ABHD6Q9BV23 337 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 MFFQ9GZY8 342 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 FAM234AQ9H0X4 552 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 DUSP21Q9H596 190 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 UCK1Q9HA47 277 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 ZFP64Q9NPA5 681 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 NDUFB11Q9NX14 153 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 NDRG3Q9UGV2 375 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 LINC01387J3KSC0 135 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 GPX5O75715 221 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 PTPN6P29350 595 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 AGFG1P52594 562 aaKnown RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 ZNF133P52736 654 aaPredicted RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 DLX5P56178 289 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 STEAP1BQ6NZ63 245 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 GTPBP8Q8N3Z3 284 aaPredicted RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 SMIM3Q9BZL3 60 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 ZCCHC4Q9H5U6 513 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 MYO16Q9Y6X6 1858 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 ASCC3Q8N3C0 2202 aaKnown RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 PSMB1P20618 241 aaKnown RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 PTAFRP25105 342 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 PTGER4P35408 488 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 C6orf183Q5T699 404 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 PRSS45Q7RTY3 260 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 RHNO1Q9BSD3 238 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 SULT1C4O75897 302 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 HAGHLQ6PII5 290 aaPredicted RBP13.45□□□□□ -0.26
COL17A1-201ENST00000353479 EGFL6Q8IUX8 553 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 SIAH3Q8IW03 269 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 SIRT5Q9NXA8 310 aa13.45□□□□□ -0.26
COL17A1-201ENST00000353479 FITM1A5D6W6 292 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 RAF1P04049 648 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 NDUFB7P17568 137 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 NFYBP25208 207 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 HTR2AP28223 471 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 INSM1Q01101 510 aaPredicted RBP13.44□□□□□ -0.26
COL17A1-201ENST00000353479 CBLN3Q6UW01 205 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 SCCPDHQ8NBX0 429 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 OR4Q3Q8NH05 313 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 SLC25A46Q96AG3 418 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 BCO1Q9HAY6 547 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 TRIM64BA6NI03 449 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 NRASP01111 189 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 CAMK2BQ13554 666 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 ELFN2Q5R3F8 820 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 SPINK14Q6IE38 97 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 KANSL1Q7Z3B3 1105 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 OR52H1Q8NGJ2 320 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 OR56B4Q8NH76 319 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 ZNF71Q9NQZ8 489 aaPredicted RBP13.44□□□□□ -0.26
COL17A1-201ENST00000353479 PRMT8Q9NR22 394 aaPredicted RBP13.44□□□□□ -0.26
COL17A1-201ENST00000353479 KIF13BQ9NQT8 1826 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 LOC285556D6RIA3 1793 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 E9PI62 339 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 H7C2Y5 167 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 ZNF728P0DKX0 622 aa13.44□□□□□ -0.26
COL17A1-201ENST00000353479 STARD6P59095 220 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms