RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PDZD9Q8IXQ8 264 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 STEAP2Q8NFT2 490 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 PTPMT1Q8WUK0 201 aaPredicted RBP9.03□□□□□ -0.96
LIG3-201ENST00000262327 CTSFQ9UBX1 484 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 PLEKHA6Q9Y2H5 1048 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 EMC9Q9Y3B6 208 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 LOC100289279A0A1B0GTE1 492 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 SDC3O75056 442 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 CD1CP29017 333 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 INSM1Q01101 510 aaPredicted RBP9.03□□□□□ -0.96
LIG3-201ENST00000262327 FMODQ06828 376 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 EIF2B1Q14232 305 aaKnown RBP9.03□□□□□ -0.96
LIG3-201ENST00000262327 FZD2Q14332 565 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 LY6G6FQ5SQ64 297 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 FNDC7Q5VTL7 733 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 RHOUQ7L0Q8 258 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 BEST3Q8N1M1 668 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 GVQW1Q8N7I0 195 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 BVESQ8NE79 360 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 WNT2BQ93097 391 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 SEH1LQ96EE3 360 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 SLC25A44Q96H78 314 aaPredicted RBP9.03□□□□□ -0.96
LIG3-201ENST00000262327 MESP1Q9BRJ9 268 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 UTP23Q9BRU9 249 aaKnown RBP9.03□□□□□ -0.96
LIG3-201ENST00000262327 PDCD10Q9BUL8 212 aa9.03□□□□□ -0.96
LIG3-201ENST00000262327 ZNF768Q9H5H4 540 aaKnown RBP9.03□□□□□ -0.96
LIG3-201ENST00000262327 NOP16Q9Y3C1 178 aaKnown RBP9.03□□□□□ -0.96
LIG3-201ENST00000262327 IGHV5-51A0A0C4DH38 117 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 ABCD4O14678 606 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 SGCEO43556 437 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 GATCO43716 136 aaKnown RBP9.02□□□□□ -0.97
LIG3-201ENST00000262327 CSF2RBP32927 897 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 LUMP51884 338 aaPredicted RBP9.02□□□□□ -0.97
LIG3-201ENST00000262327 SLC37A1P57057 533 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 GMFBP60983 142 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 ISXQ2M1V0 245 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 TMEM225Q6GV28 225 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 OR52W1Q6IF63 320 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 C12orf45Q8N5I9 185 aaPredicted RBP9.02□□□□□ -0.97
LIG3-201ENST00000262327 CASTOR1Q8WTX7 329 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 OR8B4Q96RC9 309 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 TMPRSS13Q9BYE2 586 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 MRTO4Q9UKD2 239 aaKnown RBP9.02□□□□□ -0.97
LIG3-201ENST00000262327 COA3Q9Y2R0 106 aaPredicted RBP9.02□□□□□ -0.97
LIG3-201ENST00000262327 KIR2DS5A0A0G2JLQ3 304 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 A0A0G2JNG1 304 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 SPTY2D1-AS1A0A0U1RR47 76 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 FAM74A7A6NL05 159 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 K7ESF4 209 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 KIR2DS3K7RE56 304 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 SLC17A2O00624 439 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 SRPX2O60687 465 aaPredicted RBP9.02□□□□□ -0.97
LIG3-201ENST00000262327 SLC25A12O75746 678 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 HTR2CP28335 458 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 RASGEF1BQ0VAM2 473 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 KIR2DS5Q14953 304 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 C21orf62-AS1Q17RA5 79 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIG3-201ENST00000262327 FAM74A3Q4VXF1 159 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 VWA2Q5GFL6 755 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 C5orf46Q6UWT4 87 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 WDFY1Q8IWB7 410 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 CHST4Q8NCG5 386 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 THAP3Q8WTV1 239 aaPredicted RBP9.02□□□□□ -0.97
LIG3-201ENST00000262327 ASB5Q8WWX0 329 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 KLHDC7BQ96G42 594 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 ABHD6Q9BV23 337 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 TWSG1Q9GZX9 223 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 EVA1AQ9H8M9 152 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 CENPMQ9NSP4 180 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 MLXQ9UH92 298 aa9.02□□□□□ -0.97
LIG3-201ENST00000262327 CCDC163A0A0D9SF12 145 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 HMSDA8MTL9 139 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 A8MXK9 166 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 OPN1LWP04000 364 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 EFNA3P52797 238 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 SKP1P63208 163 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 C3orf33Q6P1S2 294 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 OVCH2Q7RTZ1 564 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 BPIFB2Q8N4F0 458 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 OR5M9Q8NGP3 310 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 OR10K1Q8NGX5 313 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 MRPS24Q96EL2 167 aaKnown RBP9.01□□□□□ -0.97
LIG3-201ENST00000262327 SPACA5Q96QH8 159 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 SLC6A7Q99884 636 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 MRI1Q9BV20 369 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 PRODH2Q9UF12 536 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 MKL2Q9ULH7 1088 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 LRP12Q9Y561 859 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 PRSS37A4D1T9 235 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 PMS2P1A4D2B8 440 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 TTLL8A6PVC2 850 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 KRBOX1C9JBD0 128 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 DCNP07585 359 aaKnown RBP9.01□□□□□ -0.97
LIG3-201ENST00000262327 MPGP29372 298 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 AVPR2P30518 371 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 BLKP51451 505 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 MECP2P51608 486 aaKnown RBP9.01□□□□□ -0.97
LIG3-201ENST00000262327 EGR3Q06889 387 aa9.01□□□□□ -0.97
LIG3-201ENST00000262327 DHRS2Q13268 280 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms