RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ESRRGP62508 458 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 ENDOGQ14249 297 aaKnown RBP15.42■□□□□ 0.06
CLN3-247ENST00000636351 TMEM236Q5W0B7 351 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 KDM4DQ6B0I6 523 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 UGT2A3Q6UWM9 527 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 OR10H5Q8NGA6 315 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 SMAP2Q8WU79 429 aaPredicted RBP15.42■□□□□ 0.06
CLN3-247ENST00000636351 C11orf40Q8WZ69 217 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 FBXO17Q96EF6 278 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 CIB1Q99828 191 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 SLC25A19Q9HC21 320 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 ORC6Q9Y5N6 252 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 STAB1Q9NY15 2570 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 SONP18583 2426 aaKnown RBP15.42■□□□□ 0.06
CLN3-247ENST00000636351 IGHV2OR16-5A0A0B4J2B6 119 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 EI24O14681 340 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 PTHP01270 115 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 HMGN1P05114 100 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 SERPINA5P05154 406 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 MMP7P09237 267 aaPredicted RBP15.41■□□□□ 0.06
CLN3-247ENST00000636351 CALCRP30988 508 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 APLNRP35414 380 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 MEP1BQ16820 701 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 PABPC1L2AQ5JQF8 200 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 ACSM5Q6NUN0 579 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 VHLLQ6RSH7 139 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 B3GLCTQ6Y288 498 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 ZBTB46Q86UZ6 589 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 SLC30A7Q8NEW0 376 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 IL17RDQ8NFM7 739 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 AKR7LQ8NHP1 331 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 PRRG3Q9BZD7 231 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 C1orf198Q9H425 327 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 RIBC2Q9H4K1 309 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 CDH20Q9HBT6 801 aa15.41■□□□□ 0.06
CLN3-247ENST00000636351 CISD1Q9NZ45 108 aaKnown RBP15.41■□□□□ 0.06
CLN3-247ENST00000636351 PLCE1Q9P212 2302 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 FAM183AA6NL82 134 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 GYPBP06028 91 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 GAAP10253 952 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 CDK5Q00535 292 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 GALK2Q01415 458 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 SCRN3Q0VDG4 424 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 AQP6Q13520 282 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 DAG1Q14118 895 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 TBC1D28Q2M2D7 210 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 ZNF362Q5T0B9 420 aaPredicted RBP15.4■□□□□ 0.06
CLN3-247ENST00000636351 OR4F15Q8NGB8 312 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 OR51L1Q8NGJ5 315 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 OR6K6Q8NGW6 343 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 ZNF75AQ96N20 296 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 C9orf16Q9BUW7 83 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 OSBPL10Q9BXB5 764 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 OR2H1Q9GZK4 316 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 MED20Q9H944 212 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 FAIMQ9NVQ4 179 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 TVP23BQ9NYZ1 205 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 ASH2LQ9UBL3 628 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 TMEFF2Q9UIK5 374 aaPredicted RBP15.4■□□□□ 0.06
CLN3-247ENST00000636351 TIMM10BQ9Y5J6 103 aa15.4■□□□□ 0.06
CLN3-247ENST00000636351 E7EQL1 145 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 PRR23D1E9PI22 279 aaPredicted RBP15.39■□□□□ 0.05
CLN3-247ENST00000636351 SURF4O15260 269 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 DOK2O60496 412 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 NDUFS7O75251 213 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 IGHV4-39P01824 125 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 PRR23D2P0DMB1 279 aaPredicted RBP15.39■□□□□ 0.05
CLN3-247ENST00000636351 CLUP10909 449 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 SPI1P17947 270 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 CCNOP22674 350 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 APEX1P27695 318 aaKnown RBP15.39■□□□□ 0.05
CLN3-247ENST00000636351 FABP6P51161 128 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 SLC25A1P53007 311 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 LSM6P62312 80 aaKnown RBP15.39■□□□□ 0.05
CLN3-247ENST00000636351 PSG4Q00888 419 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 TEKQ02763 1124 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 PTGES3Q15185 160 aaKnown RBP15.39■□□□□ 0.05
CLN3-247ENST00000636351 RCN1Q15293 331 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 SNAPC1Q16533 368 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 KRT80Q6KB66 452 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 ZNF774Q6NX45 483 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 ZNF584Q8IVC4 421 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 ALDH16A1Q8IZ83 802 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 CBR4Q8N4T8 237 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 SLC26A10Q8NG04 563 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 OR1J2Q8NGS2 313 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 CDADC1Q9BWV3 514 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 WNT5BQ9H1J7 359 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 OR51V1Q9H2C8 321 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 MXRA5Q9NR99 2828 aa15.39■□□□□ 0.05
CLN3-247ENST00000636351 TVP23AA6NH52 213 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 SGCEO43556 437 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 CCL2P13500 99 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 ZNF823P16415 610 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 HTR5AP47898 357 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 GDI2P50395 445 aaKnown RBP15.38■□□□□ 0.05
CLN3-247ENST00000636351 ALDH3A2P51648 485 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 SNTB2Q13425 540 aaKnown RBP15.38■□□□□ 0.05
CLN3-247ENST00000636351 PLBD1Q6P4A8 553 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 SYT9Q86SS6 491 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms