RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GAAP10253 952 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 COX5BP10606 129 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 EVX1P49640 407 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 TEKQ02763 1124 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 KPNB1Q14974 876 aaKnown RBP17.85■□□□□ 0.45
CLN3-240ENST00000631023 ARL9Q6T311 187 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 GJC3Q8NFK1 279 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 MRPL24Q96A35 216 aaKnown RBP17.85■□□□□ 0.45
CLN3-240ENST00000631023 CDADC1Q9BWV3 514 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 PAPOLBQ9NRJ5 636 aaKnown RBP17.85■□□□□ 0.45
CLN3-240ENST00000631023 CMC2Q9NRP2 79 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 PLEK2Q9NYT0 353 aa17.85■□□□□ 0.45
CLN3-240ENST00000631023 LOC100509620A0A075B734 347 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 FAM171A2A8MVW0 826 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 GPRIN2O60269 458 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 DOK2O60496 412 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 GPANK1O95872 356 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 ZNF23P17027 643 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 SELENOVP59797 346 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 RGS7BPQ6MZT1 257 aaPredicted RBP17.84■□□□□ 0.45
CLN3-240ENST00000631023 ZFP1Q6P2D0 407 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 FAHD1Q6P587 224 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.84■□□□□ 0.45
CLN3-240ENST00000631023 AMIGO2Q86SJ2 522 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 LURAP1LQ8IV03 231 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 C1orf174Q8IYL3 243 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 SVOPLQ8N434 492 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 LRTOMTQ8WZ04 291 aa17.84■□□□□ 0.45
CLN3-240ENST00000631023 RBM4Q9BWF3 364 aaKnown RBP17.84■□□□□ 0.45
CLN3-240ENST00000631023 GDF2Q9UK05 429 aaPredicted RBP17.84■□□□□ 0.45
CLN3-240ENST00000631023 TEP1Q99973 2627 aaKnown RBP17.84■□□□□ 0.45
CLN3-240ENST00000631023 VPS13CQ709C8 3753 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 IGHV4-39P01824 125 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 HMGN1P05114 100 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 LCKP06239 509 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 CD99P14209 185 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 ZNF823P16415 610 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 HTR5AP47898 357 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 SLC25A1P53007 311 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 CRMP1Q14194 572 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 GINS1Q14691 196 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 MEP1BQ16820 701 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 IQCF1Q8N6M8 205 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 CENPNQ96H22 339 aaPredicted RBP17.83■□□□□ 0.45
CLN3-240ENST00000631023 Q96MF0 132 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 DOK1Q99704 481 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 OR51B6Q9H340 312 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 KCNG2Q9UJ96 466 aa17.83■□□□□ 0.45
CLN3-240ENST00000631023 NDUFS7O75251 213 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 TFP02787 698 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 PAICSP22234 425 aaKnown RBP17.83■□□□□ 0.44
CLN3-240ENST00000631023 PYCR1P32322 319 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 DAPP51397 102 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 OTPQ5XKR4 325 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 VASH1Q7L8A9 365 aaPredicted RBP17.83■□□□□ 0.44
CLN3-240ENST00000631023 OR9Q1Q8NGQ5 310 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 OR2AJ1Q8NGZ0 328 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 PYDC1Q8WXC3 89 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 VRK1Q99986 396 aaPredicted RBP17.83■□□□□ 0.44
CLN3-240ENST00000631023 ELOVL3Q9HB03 270 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 DYNLRB1Q9NP97 96 aa17.83■□□□□ 0.44
CLN3-240ENST00000631023 TMEM129A0AVI4 362 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 RER1O15258 196 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 ERCC1P07992 297 aaPredicted RBP17.82■□□□□ 0.44
CLN3-240ENST00000631023 PPOXP50336 477 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 BLVRAP53004 296 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 NUDT6P53370 316 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 CDK5Q00535 292 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 ACSM5Q6NUN0 579 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 PARP8Q8N3A8 854 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 ICA1LQ8NDH6 482 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 OR1J1Q8NGS3 322 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 OR1F12Q8NHA8 337 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 C4orf45Q96LM5 186 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 TMUB1Q9BVT8 246 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 MRPL37Q9BZE1 423 aaKnown RBP17.82■□□□□ 0.44
CLN3-240ENST00000631023 NMNAT2Q9BZQ4 307 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 RAB1BQ9H0U4 201 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 KRT84Q9NSB2 600 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 DUSP13Q9UII6 198 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 LHFPL6Q9Y693 200 aa17.82■□□□□ 0.44
CLN3-240ENST00000631023 SSX4O60224 188 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 FMO3P31513 532 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 EFNA4P52798 201 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 ESRRGP62508 458 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 HIST1H3AP68431 136 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 CLEC12BQ2HXU8 276 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 CCDC92Q53HC0 331 aaPredicted RBP17.81■□□□□ 0.44
CLN3-240ENST00000631023 HIST2H3PS2Q5TEC6 136 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 HIST2H3AQ71DI3 136 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 SYNPRQ8TBG9 265 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 OTULINQ96BN8 352 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 PLEKHA8Q96JA3 519 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 SYT3Q9BQG1 590 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 SEMA6AQ9H2E6 1030 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 ENOPH1Q9UHY7 261 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 ATPIF1Q9UII2 106 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 GPR160Q9UJ42 338 aa17.81■□□□□ 0.44
CLN3-240ENST00000631023 SYNGR3O43761 229 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 ICMTO60725 284 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms