RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 TIMP4Q99727 224 aa7.19□□□□□ -1.26
VPS11-209ENST00000622309 NOX4Q9NPH5 578 aa7.19□□□□□ -1.26
VPS11-209ENST00000622309 PRDM6Q9NQX0 595 aa7.19□□□□□ -1.26
VPS11-209ENST00000622309 CYTL1Q9NRR1 136 aa7.19□□□□□ -1.26
VPS11-209ENST00000622309 HCFC1R1Q9NWW0 138 aa7.19□□□□□ -1.26
VPS11-209ENST00000622309 NCDNQ9UBB6 729 aa7.19□□□□□ -1.26
VPS11-209ENST00000622309 FARSAQ9Y285 508 aaKnown RBP7.19□□□□□ -1.26
VPS11-209ENST00000622309 CEP290O15078 2479 aa7.19□□□□□ -1.26
VPS11-209ENST00000622309 PRRC2BQ5JSZ5 2229 aaKnown RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 TRBV2A0A0J9YWF9 115 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 TMEM269A0A1B0GVZ9 245 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 J3QRE1 110 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 AKR1A1P14550 325 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 NTSP30990 170 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 RPL29P47914 159 aaKnown RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 FLT3LGP49771 235 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ERVFC1-1P60608 527 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 RPS15P62841 145 aaKnown RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 MRPS6P82932 125 aaKnown RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 ZNF763Q0D2J5 394 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ZNF705AQ6ZN79 300 aaPredicted RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 FRRS1Q6ZNA5 592 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SSX7Q7RTT5 188 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 PAQR4Q8N4S7 273 aaPredicted RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 SEMA6DQ8NFY4 1073 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 OR13C8Q8NGS7 320 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 OR5K2Q8NHB8 316 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SLC41A3Q96GZ6 507 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ADGRG7Q96K78 797 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 PHB2Q99623 299 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 URM1Q9BTM9 101 aaKnown RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 SLC17A9Q9BYT1 436 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 TAF9BQ9HBM6 251 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 A4GALTQ9NPC4 353 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 PARP11Q9NR21 331 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SPHK2Q9NRA0 654 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SUSD2Q9UGT4 822 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SLC13A4Q9UKG4 626 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 AMDHD2Q9Y303 409 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 RALGAPA2Q2PPJ7 1873 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 TCRBV21S2A2A0A5A6 115 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ARL5CA6NH57 179 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 OGG1O15527 345 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SYT7O43581 403 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 PRAMEF4O60810 478 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 PQBP1O60828 265 aaKnown RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 CTNSO60931 367 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 CA11O75493 328 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ZNF432O94892 652 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 IGLV3-25P01717 112 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 AMY2AP04746 511 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 TRGC1P0CF51 173 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 CALCBP10092 127 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 EPHA1P21709 976 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 CD82P27701 267 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 MC3RP41968 323 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 CDKN1BP46527 198 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 TP53I3Q53FA7 332 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 PRAMEF9Q5VWM5 478 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 NIPAL3Q6P499 406 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 TMEM205Q6UW68 189 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 C6orf15Q6UXA7 325 aaPredicted RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 SZRD1Q7Z422 152 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ZNF280BQ86YH2 543 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 MMP21Q8N119 569 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 RNASE8Q8TDE3 154 aaKnown RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 CASTOR1Q8WTX7 329 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 AUTS2Q8WXX7 1259 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 MYADMQ96S97 322 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SPON2Q9BUD6 331 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ACTR3CQ9C0K3 210 aaPredicted RBP7.18□□□□□ -1.26
VPS11-209ENST00000622309 NELFAQ9H3P2 528 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SRMSQ9H3Y6 488 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 ASB8Q9H765 288 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 SH2B3Q9UQQ2 575 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 PRSS21Q9Y6M0 314 aa7.18□□□□□ -1.26
VPS11-209ENST00000622309 CPSF4LA6NMK7 179 aaKnown RBP7.17□□□□□ -1.26
VPS11-209ENST00000622309 TMEM238C9JI98 176 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 HHLA1C9JL84 531 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 ETHE1O95571 254 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 OR13C7P0DN81 318 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 NR2F1P10589 423 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 EDNRAP25101 427 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 GCH1P30793 250 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 PRSS3P35030 304 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 PGFP49763 221 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 TAS2R19P59542 299 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 INSM1Q01101 510 aaPredicted RBP7.17□□□□□ -1.26
VPS11-209ENST00000622309 GUCA2AQ02747 115 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 OR5I1Q13606 314 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 HERPUD1Q15011 391 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 SYPL1Q16563 259 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 C4orf17Q53FE4 359 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 ABLIM2Q6H8Q1 611 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 ULK3Q6PHR2 472 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 HMGN2P46Q86SG4 172 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 SLC24A4Q8NFF2 622 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 OR52M1Q8NGK5 317 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 MUCL1Q96DR8 90 aa7.17□□□□□ -1.26
VPS11-209ENST00000622309 ABHD17AQ96GS6 310 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms