RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF705DP0CH99 300 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF705BP0CI00 300 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 EDN3P14138 238 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 GRB2P62993 217 aaKnown RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 DOC2BQ14184 412 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 TRIM61Q5EBN2 209 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 C12orf73Q69YU5 71 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 NAXDQ8IW45 347 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 MAML2Q8IZL2 1156 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 BATF2Q8N1L9 274 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 AMER3Q8N944 861 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 C8orf44Q96CB5 159 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 MED18Q9BUE0 208 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 PRMT8Q9NR22 394 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SPNP16150 400 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 EMDP50402 254 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 CATR1Q13166 79 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 HIST2H3PS2Q5TEC6 136 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 OR52W1Q6IF63 320 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 TMEM200AQ86VY9 491 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF680Q8NEM1 530 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SLC30A7Q8NEW0 376 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 FGF14Q92915 247 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 TAAR8Q969N4 342 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 AP1S3Q96PC3 154 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 PARP12Q9H0J9 701 aaKnown RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SERTAD4Q9NUC0 356 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SLC5A6Q9Y289 635 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 D6RAR5 112 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 ABOP16442 354 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 PLGLAQ15195 96 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 C2orf76Q3KRA6 126 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 OR1M1Q8NGA1 313 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 OR4N2Q8NGD1 307 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 C3orf49Q96BT1 292 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SDHAF2Q9NX18 166 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 QPCTLQ9NXS2 382 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 HRH3Q9Y5N1 445 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 N4BP2Q86UW6 1770 aaPredicted RBP12.75□□□□□ -0.37
CPSF1-212ENST00000616140 KCNE1BA0A087WTH5 132 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SDCBPO00560 298 aaPredicted RBP12.75□□□□□ -0.37
CPSF1-212ENST00000616140 QDPRP09417 244 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 PI3P19957 117 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SERPINF1P36955 418 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 CAPZBP47756 277 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SRPXP78539 464 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 H3F3CQ6NXT2 135 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 LGI3Q8N145 548 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 OR4Q3Q8NH05 313 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 B3GALT5Q9Y2C3 310 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 PPIL1Q9Y3C6 166 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SHOXO15266 292 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 GMDSO60547 372 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 CBR1P16152 277 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 DBPQ10586 325 aaPredicted RBP12.75□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF74Q16587 644 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 DOK3Q7L591 496 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 CPEB2Q7Z5Q1 589 aaKnown RBP12.75□□□□□ -0.37
CPSF1-212ENST00000616140 FJX1Q86VR8 437 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF784Q8NCA9 323 aaPredicted RBP12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SEH1LQ96EE3 360 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 LRRC46Q96FV0 321 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF416Q9BWM5 594 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 LAT2Q9GZY6 243 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SH3BGRL2Q9UJC5 107 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 SLC17A4Q9Y2C5 497 aa12.75□□□□□ -0.37
CPSF1-212ENST00000616140 PRSS37A4D1T9 235 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF814B7Z6K7 855 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 EFSO43281 561 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 PLRG1O43660 514 aaKnown RBP12.74□□□□□ -0.37
CPSF1-212ENST00000616140 FAM53BQ14153 422 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 CST9LP1Q5W188 147 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 SLC16A12Q6ZSM3 486 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 POC1BQ8TC44 478 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 TMED6Q8WW62 240 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 TRPM6Q9BX84 2022 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 A8MXE2 369 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 ATPAF1Q5TC12 328 aaPredicted RBP12.74□□□□□ -0.37
CPSF1-212ENST00000616140 TIGD3Q6B0B8 471 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 VHLLQ6RSH7 139 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 MED30Q96HR3 178 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 CDCP1Q9H5V8 836 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 ZDBF2Q9HCK1 2354 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 SIPA1L3O60292 1781 aaPredicted RBP12.74□□□□□ -0.37
CPSF1-212ENST00000616140 TRIM64BA6NI03 449 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF705GA8MUZ8 300 aaPredicted RBP12.74□□□□□ -0.37
CPSF1-212ENST00000616140 CLDN1O95832 211 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 TGM1P22735 817 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 RNLSQ5VYX0 342 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 WDR88Q6ZMY6 472 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 SMIM4Q8WVI0 70 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 GPR84Q9NQS5 396 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 SERGEFQ9UGK8 458 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 FER1L6Q2WGJ9 1857 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF587BE7ETH6 402 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 NXPH2O95156 264 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 OLFM2O95897 454 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 CD160O95971 181 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 LIMS3P0CW19 117 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 LIMS4P0CW20 117 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms