RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 RBMS3Q6XE24 437 aaKnown RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 ZNF584Q8IVC4 421 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 CSNK1A1LQ8N752 337 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 BHLHE23Q8NDY6 225 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 RXFP4Q8TDU9 374 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 C4orf45Q96LM5 186 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 OR2M4Q96R27 311 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 FBXL21Q9UKT6 434 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 PRR19A6NJB7 356 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 EIF1AYO14602 144 aaKnown RBP16.53■□□□□ 0.24
UPF1-210ENST00000600689 ARPC3O15145 178 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 HOXB2P14652 356 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 AIMP2Q13155 320 aaKnown RBP16.53■□□□□ 0.24
UPF1-210ENST00000600689 CD226Q15762 336 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 ASPHD2Q6ICH7 369 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 KDM8Q8N371 416 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 ZSCAN1Q8NBB4 408 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 NUBPLQ8TB37 319 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 SLC25A44Q96H78 314 aaPredicted RBP16.53■□□□□ 0.24
UPF1-210ENST00000600689 UQCC2Q9BRT2 126 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 MRI1Q9BV20 369 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 SDK1Q7Z5N4 2213 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 RTTNQ86VV8 2226 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 LINC00587B1AMM8 73 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 PRSS44E7EML9 344 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 SULT2B1O00204 365 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 KLF8O95600 359 aaPredicted RBP16.53■□□□□ 0.24
UPF1-210ENST00000600689 ALOX5APP20292 161 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 TGIF1Q15583 401 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 CDC20BQ86Y33 519 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 CA13Q8N1Q1 262 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 TSPAN32Q96QS1 320 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 KIR3DX1Q9H7L2 352 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 BIN3Q9NQY0 253 aa16.53■□□□□ 0.24
UPF1-210ENST00000600689 DHCR7Q9UBM7 475 aaKnown RBP16.53■□□□□ 0.24
UPF1-210ENST00000600689 TRAV20A0A0B4J274 112 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 TMEM212A6NML5 194 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 SGCEO43556 437 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 OR2F2O95006 317 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 MPZL1O95297 269 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 RD3LP0DJH9 198 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 HTR2CP28335 458 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 PRPS1P60891 318 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 OR2F1Q13607 317 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 RNASE10Q5GAN6 216 aaKnown RBP16.52■□□□□ 0.24
UPF1-210ENST00000600689 NKAPLQ5M9Q1 402 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 SLC41A2Q96JW4 573 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 DCBLD2Q96PD2 775 aa16.52■□□□□ 0.24
UPF1-210ENST00000600689 ATXN7L1Q9ULK2 861 aaPredicted RBP16.52■□□□□ 0.24
UPF1-210ENST00000600689 A0A087WV62 115 aa16.52■□□□□ 0.23
UPF1-210ENST00000600689 SERINC4A6NH21 518 aa16.52■□□□□ 0.23
UPF1-210ENST00000600689 ERCC1P07992 297 aaPredicted RBP16.52■□□□□ 0.23
UPF1-210ENST00000600689 MAOAP21397 527 aa16.52■□□□□ 0.23
UPF1-210ENST00000600689 PMPCAQ10713 525 aa16.52■□□□□ 0.23
UPF1-210ENST00000600689 INPP5JQ15735 1006 aaPredicted RBP16.52■□□□□ 0.23
UPF1-210ENST00000600689 EXOSC6Q5RKV6 272 aaKnown RBP16.52■□□□□ 0.23
UPF1-210ENST00000600689 NT5CQ8TCD5 201 aa16.52■□□□□ 0.23
UPF1-210ENST00000600689 COA4Q9NYJ1 87 aa16.52■□□□□ 0.23
UPF1-210ENST00000600689 CLEC1BQ9P126 229 aa16.52■□□□□ 0.23
UPF1-210ENST00000600689 A0A1W2PPC1 479 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 CDC14CA4D256 554 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SLC17A2O00624 439 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 AK1P00568 194 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 CD1AP06126 327 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SMIM10L1P0DMW3 83 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SDHAP31040 664 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 PAPD4Q6PIY7 484 aaKnown RBP16.51■□□□□ 0.23
UPF1-210ENST00000600689 LINC00114Q6XXX2 140 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SMIM10Q96HG1 83 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 Q9N2J8 555 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 TRBV5-7A0A0A0MS05 114 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 TGFBR3LH3BV60 316 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 CSRP1P21291 193 aaKnown RBP16.51■□□□□ 0.23
UPF1-210ENST00000600689 ID4P47928 161 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 DNASE1L1P49184 302 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 PNLIPRP2P54317 469 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 BIKQ13323 160 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 CNTNAP3BQ96NU0 1288 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SPACA5Q96QH8 159 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SLC16A7O60669 478 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 EIF3GO75821 320 aaKnown RBP eCLIP16.51■□□□□ 0.23
UPF1-210ENST00000600689 SNAPC5O75971 98 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 EIF1AXP47813 144 aaKnown RBP16.51■□□□□ 0.23
UPF1-210ENST00000600689 TDGQ13569 410 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SLC9A3R2Q15599 337 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 ZNF74Q16587 644 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 TRAPPC6BQ86SZ2 158 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 ZNF595Q8IYB9 648 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SFT2D1Q8WV19 159 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 SEMA6CQ9H3T2 930 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 HRASLS2Q9NWW9 162 aa16.51■□□□□ 0.23
UPF1-210ENST00000600689 WISP1O95388 367 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 RENP00797 406 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 PMP2P02689 132 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 SERPINF1P36955 418 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 TNFRSF4P43489 277 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 DMWDQ09019 674 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 ZNF528Q3MIS6 628 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 TMEM225Q6GV28 225 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 SLC29A4Q7RTT9 530 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms