RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ACADSP16219 412 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 EPHA3P29320 983 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 CFHR2P36980 270 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 POLR2JP52435 117 aaKnown RBP8.43□□□□□ -1.06
TRIM28-210ENST00000597618 LOXL3P58215 753 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF404Q494X3 552 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 FAM27BQ5VT28 67 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 TTC33Q6PID6 262 aaPredicted RBP8.43□□□□□ -1.06
TRIM28-210ENST00000597618 VASH1Q7L8A9 365 aaPredicted RBP8.43□□□□□ -1.06
TRIM28-210ENST00000597618 GOLGA6L1Q8N7Z2 621 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 ZSCAN4Q8NAM6 433 aaPredicted RBP8.43□□□□□ -1.06
TRIM28-210ENST00000597618 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.43□□□□□ -1.06
TRIM28-210ENST00000597618 LRTOMTQ8WZ04 291 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 GTF2H4Q92759 462 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 MCHR1Q99705 422 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 WFDC6Q9BQY6 131 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 TMEM246Q9BRR3 403 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 CDADC1Q9BWV3 514 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 PAIP1Q9H074 479 aaKnown RBP8.43□□□□□ -1.06
TRIM28-210ENST00000597618 WDR55Q9H6Y2 383 aaPredicted RBP8.43□□□□□ -1.06
TRIM28-210ENST00000597618 ACOXLQ9NUZ1 547 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 TIMM10BQ9Y5J6 103 aa8.43□□□□□ -1.06
TRIM28-210ENST00000597618 DNAH3Q8TD57 4116 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF879B4DU55 563 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 BLOC1S5-TXNDC5H3BN57 136 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 M0R3H8 397 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 HDAC3O15379 428 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF205O95201 554 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 CYB5R3P00387 301 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 F13BP05160 661 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 CST2P09228 141 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 BGNP21810 368 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 SLC6A2P23975 617 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 LAP3P28838 519 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 AQP1P29972 269 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 IER3P46695 156 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 SRP9P49458 86 aaKnown RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 UGT2B15P54855 530 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 PCBP3P57721 371 aaKnown RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 GUCY1A3Q02108 690 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 FMODQ06828 376 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 RPL18Q07020 188 aaKnown RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 CD47Q08722 323 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 STX3Q13277 289 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 SCARB2Q14108 478 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF181Q2M3W8 571 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 VAX1Q5SQQ9 334 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 WDR25Q64LD2 544 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 NXNQ6DKJ4 435 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 DHRS7BQ6IAN0 325 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 Q6ZSV7 163 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 LDLRAD3Q86YD5 345 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 C1orf87Q8N0U7 546 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 ATG16L2Q8NAA4 619 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 C10orf82Q8WW14 230 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 NSMAFQ92636 917 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 PPP1R14AQ96A00 147 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 NMD3Q96D46 503 aaKnown RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 CMBLQ96DG6 245 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 MPP4Q96JB8 637 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 COG8Q96MW5 612 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 ROPN1BQ9BZX4 212 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 DPAGT1Q9H3H5 408 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 ROPN1Q9HAT0 212 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 SDR39U1Q9NRG7 319 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-210ENST00000597618 INIPQ9NRY2 104 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 TBCCD1Q9NVR7 557 aa8.42□□□□□ -1.06
TRIM28-210ENST00000597618 IGKV1D-43A0A0B4J1Z2 117 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 IGHV1-69DA0A0B4J2H0 117 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 CENPVL3A0A0U1RRI6 287 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 NPIPB13A6NJU9 1138 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 CPSF4LA6NMK7 179 aaKnown RBP8.41□□□□□ -1.06
TRIM28-210ENST00000597618 C22orf46C9J442 243 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 NPIPB4C9JG80 1138 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 TOX4O94842 621 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 LYPD3O95274 346 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 IGHV1-69P01742 117 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 LIPFP07098 398 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 SFTPBP07988 381 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 COX5BP10606 129 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 HOXB9P17482 250 aaPredicted RBP8.41□□□□□ -1.06
TRIM28-210ENST00000597618 PPIBP23284 216 aaKnown RBP8.41□□□□□ -1.06
TRIM28-210ENST00000597618 GUCA1AP43080 201 aaPredicted RBP8.41□□□□□ -1.06
TRIM28-210ENST00000597618 NPY4RP50391 375 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 EGR3Q06889 387 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 ENTPD8Q5MY95 495 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 ARMC4Q5T2S8 1044 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 CD276Q5ZPR3 534 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 SLC2A7Q6PXP3 512 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 DCDC5Q6ZRR9 648 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 SMYD1Q8NB12 490 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 OR10AD1Q8NGE0 317 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 OR9I1Q8NGQ6 314 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF420Q8TAQ5 688 aaPredicted RBP8.41□□□□□ -1.06
TRIM28-210ENST00000597618 FNDC8Q8TC99 324 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 ADAMTS16Q8TE57 1224 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 HAVCR1Q96D42 359 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 MEGF10Q96KG7 1140 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 TBX15Q96SF7 602 aa8.41□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF426Q9BUY5 554 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms