RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 OPRL1P41146 370 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 RIDAP52758 137 aaKnown RBP13.41□□□□□ -0.26
SS18-215ENST00000580642 HCCSP53701 268 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 SIRPAP78324 504 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 DBPQ10586 325 aaPredicted RBP13.41□□□□□ -0.26
SS18-215ENST00000580642 FOXF2Q12947 444 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 TRAM1Q15629 374 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 MEP1BQ16820 701 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 TIMM50Q3ZCQ8 353 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 OR2G6Q5TZ20 316 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 RPL22L1Q6P5R6 122 aaKnown RBP13.41□□□□□ -0.26
SS18-215ENST00000580642 SSX8Q7RTT4 187 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 SSX6Q7RTT6 188 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 BTLAQ7Z6A9 289 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 KRT77Q7Z794 578 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 ZNF420Q8TAQ5 688 aaPredicted RBP13.41□□□□□ -0.26
SS18-215ENST00000580642 GATAD2BQ8WXI9 593 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 NANOS1Q8WY41 292 aaKnown RBP13.41□□□□□ -0.26
SS18-215ENST00000580642 RND1Q92730 232 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 UFD1Q92890 307 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 C4orf36Q96KX1 117 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 FOXN4Q96NZ1 517 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 HDHD5Q9BXW7 423 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 HDHD2Q9H0R4 259 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 EMC7Q9NPA0 242 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 OBP2BQ9NPH6 170 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 PRSS50Q9UI38 385 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 TINAGQ9UJW2 476 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 FBXL3Q9UKT7 428 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 KLHDC2Q9Y2U9 406 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 MEMO1Q9Y316 297 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 GTF3C1Q12789 2109 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 OGG1O15527 345 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 UBL3O95164 117 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 IGHV3-9P01782 118 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 COX5BP10606 129 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 EDNRAP25101 427 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 ARR3P36575 388 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 RGS6P49758 472 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 CCR9P51686 369 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 OR12D2P58182 307 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 GRB2P62993 217 aaKnown RBP13.4□□□□□ -0.26
SS18-215ENST00000580642 PMPCAQ10713 525 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 LIPNQ5VXI9 398 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 MTFR2Q6P444 385 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 VWA1Q6PCB0 445 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 GDPGP1Q6ZNW5 385 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 SLC16A14Q7RTX9 510 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 MRGPRGQ86SM5 289 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.4□□□□□ -0.26
SS18-215ENST00000580642 GALNT11Q8NCW6 608 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 OR1K1Q8NGR3 316 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 RPS4Y2Q8TD47 263 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 BCL2L2Q92843 193 aaPredicted RBP13.4□□□□□ -0.26
SS18-215ENST00000580642 SLAMF6Q96DU3 332 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 PELI1Q96FA3 418 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 MAP6Q96JE9 813 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 OPALINQ96PE5 141 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 COQ7Q99807 217 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 ISG20L2Q9H9L3 353 aaKnown RBP13.4□□□□□ -0.26
SS18-215ENST00000580642 GALNT8Q9NY28 637 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 MRM2Q9UI43 246 aaKnown RBP13.4□□□□□ -0.26
SS18-215ENST00000580642 GNG8Q9UK08 70 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 IKZF2Q9UKS7 526 aa13.4□□□□□ -0.26
SS18-215ENST00000580642 BSNQ9UPA5 3926 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 DPPA5A6NC42 116 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 DVL2O14641 736 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 PLPP2O43688 288 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 GPRIN2O60269 458 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 ITGA5P08648 1049 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 H2BFMP0C1H6 154 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 HSMCR30P0CW71 290 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 B4GALT1P15291 398 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 MMP16P51512 607 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 TMBIM6P55061 237 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 RAB35Q15286 201 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 ELFN2Q5R3F8 820 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.39□□□□□ -0.27
SS18-215ENST00000580642 SATL1Q86VE3 508 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 P2RY8Q86VZ1 359 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 ANKRD13BQ86YJ7 626 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 KLBQ86Z14 1044 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 ALDH16A1Q8IZ83 802 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 MS4A15Q8N5U1 240 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 RFLNBQ8N5W9 214 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 YIPF7Q8N8F6 280 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 NAXEQ8NCW5 288 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 SMAP2Q8WU79 429 aaPredicted RBP13.39□□□□□ -0.27
SS18-215ENST00000580642 YIPF6Q96EC8 236 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 FBXO17Q96EF6 278 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 OR10A4Q9H209 315 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 MOB1AQ9H8S9 216 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 ELOVL3Q9HB03 270 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 NDUFB11Q9NX14 153 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 ELOVL5Q9NYP7 299 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 BOD1L1Q8NFC6 3051 aa13.39□□□□□ -0.27
SS18-215ENST00000580642 TRGV8A0A0C4DH27 118 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 A0A1B0GUH1 482 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 A8MXE2 369 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 MMP7P09237 267 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms