RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 VASH1Q7L8A9 365 aaPredicted RBP22.01■■□□□ 1.11
SHMT1-207ENST00000580002 HSD17B8Q92506 261 aa22.01■■□□□ 1.11
SHMT1-207ENST00000580002 CENPMQ9NSP4 180 aa22.01■■□□□ 1.11
SHMT1-207ENST00000580002 BABAM2Q9NXR7 383 aa22.01■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF224Q9NZL3 707 aa22.01■■□□□ 1.11
SHMT1-207ENST00000580002 PCNX1Q96RV3 2341 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 ATXN7O15265 892 aaPredicted RBP22■■□□□ 1.11
SHMT1-207ENST00000580002 RPP14O95059 124 aaKnown RBP22■■□□□ 1.11
SHMT1-207ENST00000580002 PRB1P04280 392 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 NR4A1P22736 598 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 TGFBR2P37173 567 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 LSM6P62312 80 aaKnown RBP22■■□□□ 1.11
SHMT1-207ENST00000580002 TUBA1BP68363 451 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 TUBA1AQ71U36 451 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 GPR141Q7Z602 305 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 LIX1LQ8IVB5 337 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 OR52N5Q8NH56 324 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 FCGR1BQ92637 280 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 OR8B4Q96RC9 309 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 ELOVL3Q9HB03 270 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 PNRC2Q9NPJ4 139 aaKnown RBP22■■□□□ 1.11
SHMT1-207ENST00000580002 FBXL3Q9UKT7 428 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 PROCRQ9UNN8 238 aa22■■□□□ 1.11
SHMT1-207ENST00000580002 LYZL6O75951 148 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 HIKESHIQ53FT3 197 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 SLAMF6Q96DU3 332 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 TMEM14AQ9Y6G1 99 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 METTL15A6NJ78 407 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 MT-ND5P03915 603 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 NPR2P20594 1047 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 CTSSP25774 331 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 MPGP29372 298 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 CCDC92Q53HC0 331 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-207ENST00000580002 GPR107Q5VW38 600 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 LIPNQ5VXI9 398 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 LIPKQ5VXJ0 399 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 OR7E24Q6IFN5 339 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 YIPF7Q8N8F6 280 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF454Q8N9F8 522 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 OR2AJ1Q8NGZ0 328 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 PPP1R14AQ96A00 147 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 YIPF6Q96EC8 236 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 DMRTA2Q96SC8 542 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 MNTQ99583 582 aa21.99■■□□□ 1.11
SHMT1-207ENST00000580002 ANOS1P23352 680 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 IGFBP7Q16270 282 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 MYO7BQ6PIF6 2116 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF474Q6S9Z5 364 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-207ENST00000580002 SYS1Q8N2H4 156 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 C1orf198Q9H425 327 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 NOX3Q9HBY0 568 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 LRP12Q9Y561 859 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 CEPT1Q9Y6K0 416 aa21.98■■□□□ 1.11
SHMT1-207ENST00000580002 TMCC2O75069 709 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 HLA-HP01893 362 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF32P17041 273 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 BMP5P22003 454 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 Q6ZT83 130 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 SLC16A14Q7RTX9 510 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 KRT77Q7Z794 578 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 LUZP2Q86TE4 346 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 GABRG1Q8N1C3 465 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 OR1K1Q8NGR3 316 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 RNF133Q8WVZ7 376 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 SLC7A6Q92536 515 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 SLC5A6Q9Y289 635 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 MEMO1Q9Y316 297 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 A0A1W2PR80 420 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 CRHP06850 196 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 CST2P09228 141 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 OPRL1P41146 370 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 CA7P43166 264 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 RGS6P49758 472 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 NANOS3P60323 173 aaKnown RBP21.97■■□□□ 1.11
SHMT1-207ENST00000580002 ACTA2P62736 377 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 ACTG2P63267 376 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 ROM1Q03395 351 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 EGR3Q06889 387 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 MLLT11Q13015 90 aaPredicted RBP21.97■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF679Q8IYX0 411 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 AKR7LQ8NHP1 331 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 ASB17Q8WXJ9 295 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 BCL2L2Q92843 193 aaPredicted RBP21.97■■□□□ 1.11
SHMT1-207ENST00000580002 FUNDC2Q9BWH2 189 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 RBM38Q9H0Z9 239 aaKnown RBP21.97■■□□□ 1.11
SHMT1-207ENST00000580002 ST6GALNAC2Q9UJ37 374 aa21.97■■□□□ 1.11
SHMT1-207ENST00000580002 DOK2O60496 412 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 RAD51DO75771 328 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 PNPP00491 289 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 KRT8P05787 483 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 CD36P16671 472 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 CELP19835 753 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 HIST1H3AP68431 136 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 HIST2H3PS2Q5TEC6 136 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF774Q6NX45 483 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 HIST2H3AQ71DI3 136 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF627Q7L945 461 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 CLVS1Q8IUQ0 354 aaPredicted RBP21.96■■□□□ 1.11
SHMT1-207ENST00000580002 PHC2Q8IXK0 858 aa21.96■■□□□ 1.11
SHMT1-207ENST00000580002 ZNF433Q8N7K0 673 aaPredicted RBP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms