RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SNX33Q8WV41 574 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 NMNAT3Q96T66 252 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 EGLN3Q9H6Z9 239 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 REEP1Q9H902 201 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 POLR1DQ9Y2S0 133 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 CDH10Q9Y6N8 788 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 IGHV4-61A0A0C4DH41 118 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 LYNX1G3V0Z9 82 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 ACOT8O14734 319 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 IDH3BO43837 385 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 LYNX1P0DP58 116 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 COX5BP10606 129 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 GIFP27352 417 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 GCH1P30793 250 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 GLO1Q04760 184 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 TRAP1Q12931 704 aaKnown RBP20.45■□□□□ 0.86
SHMT1-206ENST00000579558 MOGQ16653 247 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 ZNF718Q3SXZ3 478 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 DNAL1Q4LDG9 190 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 ZNF770Q6IQ21 691 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-206ENST00000579558 RPL13AP3Q6NVV1 102 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 RFPL4BQ6ZWI9 263 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 OR52L1Q8NGH7 329 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 SLC25A40Q8TBP6 338 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 C4orf45Q96LM5 186 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 SNX18Q96RF0 628 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 ELOVL3Q9HB03 270 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 SRA1Q9HD15 236 aaKnown RBP20.45■□□□□ 0.86
SHMT1-206ENST00000579558 HINT3Q9NQE9 182 aaKnown RBP20.45■□□□□ 0.86
SHMT1-206ENST00000579558 VNN3Q9NY84 501 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 PLEK2Q9NYT0 353 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 ASH2LQ9UBL3 628 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 SAMHD1Q9Y3Z3 626 aaKnown RBP20.45■□□□□ 0.86
SHMT1-206ENST00000579558 U3KQV3 271 aa20.45■□□□□ 0.86
SHMT1-206ENST00000579558 IGLV1-36A0A0B4J1U3 117 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 DCTN6O00399 190 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 GYG2O15488 501 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 GPANK1O95872 356 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 GASTP01350 101 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 HPXP02790 462 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 IGHV4-31P0DP07 118 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 RAP2AP10114 183 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 ARHGDIAP52565 204 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 PPP1CBP62140 327 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 KCNMB1Q16558 191 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 CLEC12AQ5QGZ9 265 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 ELFN2Q5R3F8 820 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 TMEM154Q6P9G4 183 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 ARL9Q6T311 187 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 VASH1Q7L8A9 365 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-206ENST00000579558 ZSCAN2Q7Z7L9 614 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-206ENST00000579558 C1orf174Q8IYL3 243 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 AQP11Q8NBQ7 271 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 SDR9C7Q8NEX9 313 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 MARS2Q96GW9 593 aaKnown RBP20.44■□□□□ 0.86
SHMT1-206ENST00000579558 OR2J1Q9GZK6 312 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 RPRD1BQ9NQG5 326 aaKnown RBP20.44■□□□□ 0.86
SHMT1-206ENST00000579558 B9D1Q9UPM9 204 aa20.44■□□□□ 0.86
SHMT1-206ENST00000579558 C17orf100A8MU93 164 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 ICMTO60725 284 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 ABHD16AO95870 558 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 NGFP01138 241 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 IGHV3-13P01766 116 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 MPV17P39210 176 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 SLC35F1Q5T1Q4 408 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 C6orf52Q5T4I8 152 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 CYB5R2Q6BCY4 276 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 PGM2L1Q6PCE3 622 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 OR6V1Q8N148 313 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 OR52E2Q8NGJ4 325 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 IPCEF1Q8WWN9 437 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-206ENST00000579558 RACGAP1Q9H0H5 632 aa20.43■□□□□ 0.86
SHMT1-206ENST00000579558 A8MV72 311 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-206ENST00000579558 CRLF1O75462 422 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 NCR1O76036 304 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 MT-ND5P03915 603 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 GAAP10253 952 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 ZNF23P17027 643 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 MAGEB1P43366 347 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 GZMKP49863 264 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 KHDRBS1Q07666 443 aaKnown RBP eCLIP20.42■□□□□ 0.86
SHMT1-206ENST00000579558 RIN1Q13671 783 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 MEP1BQ16820 701 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 MICAQ29983 383 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 RASSF6Q6ZTQ3 369 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 ADGRG5Q8IZF4 528 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 KLF14Q8TD94 323 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-206ENST00000579558 RDH5Q92781 318 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 CHID1Q9BWS9 393 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 PLA2G12AQ9BZM1 189 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 FN3KQ9H479 309 aa20.42■□□□□ 0.86
SHMT1-206ENST00000579558 SONP18583 2426 aaKnown RBP20.42■□□□□ 0.86
SHMT1-206ENST00000579558 OR6C68A6NDL8 312 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 AQP12BA6NM10 295 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 ZNF16P17020 682 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-206ENST00000579558 DBPQ10586 325 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-206ENST00000579558 PCGF3Q3KNV8 242 aa20.41■□□□□ 0.86
SHMT1-206ENST00000579558 CCDC92Q53HC0 331 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-206ENST00000579558 MBNL2Q5VZF2 373 aaKnown RBP20.41■□□□□ 0.86
SHMT1-206ENST00000579558 AQP12AQ8IXF9 295 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms