RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RIDAP52758 137 aaKnown RBP12.03□□□□□ -0.48
CCDC40-209ENST00000573474 AQP6Q13520 282 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 TIMM50Q3ZCQ8 353 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 LIPNQ5VXI9 398 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 LRRN1Q6UXK5 716 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 TFAP2EQ6VUC0 442 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 ZNF813Q6ZN06 617 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 SLC16A12Q6ZSM3 486 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 SPATC1Q76KD6 591 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 RHOUQ7L0Q8 258 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 ZNF627Q7L945 461 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 LRRC18Q8N456 261 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 SLC22A24Q8N4F4 322 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 ZFP41Q8N8Y5 198 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 GJC3Q8NFK1 279 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 MAP6Q96JE9 813 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 DOK1Q99704 481 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 KCNN2Q9H2S1 579 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 PLSCR4Q9NRQ2 329 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 CENPMQ9NSP4 180 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 MALT1Q9UDY8 824 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 ST6GALNAC2Q9UJ37 374 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 SIRT4Q9Y6E7 314 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-209ENST00000573474 ATMQ13315 3056 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 TLN1Q9Y490 2541 aaKnown RBP12.02□□□□□ -0.48
CCDC40-209ENST00000573474 PNMA8CA0A1B0GUJ8 204 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 PLPP2O43688 288 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 AIREO43918 545 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 TOXO94900 526 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 RPP14O95059 124 aaKnown RBP12.02□□□□□ -0.49
CCDC40-209ENST00000573474 GABARAPO95166 117 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 CD1AP06126 327 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 H2BFMP0C1H6 154 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 B4GALT1P15291 398 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 PSMA1P25786 263 aaKnown RBP12.02□□□□□ -0.49
CCDC40-209ENST00000573474 GABRA5P31644 462 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 CEACAM8P31997 349 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-209ENST00000573474 PSMB10P40306 273 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 OPRL1P41146 370 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 SH3BGRP55822 239 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-209ENST00000573474 PCBD1P61457 104 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 HIST1H3AP68431 136 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 FOXF2Q12947 444 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 CDK5R1Q15078 307 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 HIST2H3PS2Q5TEC6 136 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 DMKNQ6E0U4 476 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-209ENST00000573474 PCSK4Q6UW60 755 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 CFAP77Q6ZQR2 320 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 HIST2H3AQ71DI3 136 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 SYT9Q86SS6 491 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-209ENST00000573474 SH3GL3Q99963 347 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 STUB1Q9UNE7 303 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 SF3B6Q9Y3B4 125 aaKnown RBP12.02□□□□□ -0.49
CCDC40-209ENST00000573474 GRIP1Q9Y3R0 1128 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 LRP12Q9Y561 859 aa12.02□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF878C9JN71 531 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 H3BMQ9 156 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 RER1O15258 196 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 TNFSF13O75888 250 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 GLI4P10075 376 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 DCTDP32321 178 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 CRYBB2P43320 205 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 TAF13Q15543 124 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 TRAM1Q15629 374 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 CTF1Q16619 201 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 C9orf135Q5VTT2 229 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF544Q6NX49 715 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 FDX2Q6P4F2 183 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 VWA1Q6PCB0 445 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 ARL9Q6T311 187 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 KLHL24Q6TFL4 600 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 C3P1Q6ZMU1 363 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 GDPGP1Q6ZNW5 385 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 SLC16A14Q7RTX9 510 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 BTLAQ7Z6A9 289 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 SKA3Q8IX90 412 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 ST6GALNAC3Q8NDV1 305 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 OR10S1Q8NGN2 331 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 RPS4Y2Q8TD47 263 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 RNF166Q96A37 237 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-209ENST00000573474 C12orf43Q96C57 262 aaKnown RBP12.01□□□□□ -0.49
CCDC40-209ENST00000573474 STARD4Q96DR4 205 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 FBXO17Q96EF6 278 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 OR51E2Q9H255 320 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 NIPAL2Q9H841 368 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 PROCRQ9UNN8 238 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 TIMM10BQ9Y5J6 103 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 ZZEF1O43149 2961 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 BOD1L1Q8NFC6 3051 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 GTF3C1Q12789 2109 aa12.01□□□□□ -0.49
CCDC40-209ENST00000573474 TRBV2A0A0J9YWF9 115 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 GPX5O75715 221 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 WNT11O96014 354 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 CGAP01215 116 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 NR4A1P22736 598 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 CTSSP25774 331 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 FOXG1P55316 489 aaPredicted RBP12□□□□□ -0.49
CCDC40-209ENST00000573474 RPS25P62851 125 aaKnown RBP12□□□□□ -0.49
CCDC40-209ENST00000573474 GRB2P62993 217 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms