RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 SGK3Q96BR1 496 aa13.96□□□□□ -0.18
CIITA-204ENST00000570546 SLC25A32Q9H2D1 315 aa13.96□□□□□ -0.18
CIITA-204ENST00000570546 SIRT3Q9NTG7 399 aaPredicted RBP13.96□□□□□ -0.18
CIITA-204ENST00000570546 OR4E1P0C645 316 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 RAB5CP51148 216 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 PPP1R35Q8TAP8 253 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 TAS2R5Q9NYW4 299 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 PCDHGA5Q9Y5G8 931 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 FRG2CA6NGY1 282 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 ATP6V1G2-DDX39BF2Z307 99 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 PRAMEF4O60810 478 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 TMEM127O75204 238 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 RGS11O94810 467 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 IGHEP01854 428 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 CD79BP40259 229 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 EIF4EBP2Q13542 120 aaPredicted RBP13.95□□□□□ -0.18
CIITA-204ENST00000570546 MOB1AQ9H8S9 216 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 TAF9BQ9HBM6 251 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 TGFBR3Q03167 851 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 PXDC1Q5TGL8 231 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 TEX261Q6UWH6 196 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 ACOT7LQ6ZUV0 252 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 OR2AK2Q8NG84 335 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 OR52B4Q8NGK2 314 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 SDSLQ96GA7 329 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 ABHD6Q9BV23 337 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 B3GALT5Q9Y2C3 310 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 FBXO7Q9Y3I1 522 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 U3KQ87 197 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 TTC3P53804 2025 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 LY75O60449 1722 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 STMND1H3BQB6 276 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 SGCEO43556 437 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 MT-CO2P00403 227 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 PHLDA2Q53GA4 152 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 TMEM200AQ86VY9 491 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 ZNF547Q8IVP9 402 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 NKX6-2Q9C056 277 aaPredicted RBP13.95□□□□□ -0.18
CIITA-204ENST00000570546 ZCCHC4Q9H5U6 513 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 DNAJB11Q9UBS4 358 aa13.95□□□□□ -0.18
CIITA-204ENST00000570546 OR5H14A6NHG9 310 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 SERPINF1P36955 418 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 RAB4BP61018 213 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 LINC00303Q3SY05 128 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 FAM122BQ7Z309 247 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 MORN4Q8NDC4 146 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 FAM71CQ8NEG0 241 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 OR4C16Q8NGL9 310 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ZG16BQ96DA0 208 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 SIGLEC11Q96RL6 698 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 NKX3-1Q99801 234 aaPredicted RBP13.94□□□□□ -0.18
CIITA-204ENST00000570546 POMT2Q9UKY4 750 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 A0A087WUJ7 227 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 CEBPZOSA8MTT3 80 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 XRCC3O43542 346 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 PLPP2O43688 288 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 CLINT1Q14677 625 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 MSMO1Q15800 293 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ZBTB37Q5TC79 503 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 OR52N5Q8NH56 324 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 OBP2BQ9NPH6 170 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 PISDQ9UG56 409 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 OR14J1Q9UGF5 321 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 A0A0U1RQK1 487 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ATF1P18846 271 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ALOX5APP20292 161 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 IL10RAQ13651 578 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 STK11Q15831 433 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 NKAIN1Q4KMZ8 207 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 SFRP5Q5T4F7 317 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 OR10K2Q6IF99 312 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 SEMA6DQ8NFY4 1073 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 PLEKHB1Q9UF11 243 aaPredicted RBP13.94□□□□□ -0.18
CIITA-204ENST00000570546 ZNF223Q9UK11 482 aaPredicted RBP13.94□□□□□ -0.18
CIITA-204ENST00000570546 TRAPPC2LQ9UL33 140 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 RNF212BA8MTL3 300 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 QDPRP09417 244 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 GNB3P16520 340 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 IL2RGP31785 369 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 FAM53BQ14153 422 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ZNF628Q5EBL2 1059 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 THEM4Q5T1C6 240 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 RAB9BQ9NP90 201 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 MCM3APO60318 1980 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 TTLL8A6PVC2 850 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 IMPA2O14732 288 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 TLE4Q04727 773 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 DCAF12Q5T6F0 453 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ZNF813Q6ZN06 617 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ST8SIA4Q92187 359 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 FRZBQ92765 325 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 YIPF5Q969M3 257 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 CMTM3Q96MX0 182 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 PBX4Q9BYU1 374 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 ASH2LQ9UBL3 628 aa13.94□□□□□ -0.18
CIITA-204ENST00000570546 MSR1P21757 451 aa13.93□□□□□ -0.18
CIITA-204ENST00000570546 GZMMP51124 257 aa13.93□□□□□ -0.18
CIITA-204ENST00000570546 ZNF74Q16587 644 aa13.93□□□□□ -0.18
CIITA-204ENST00000570546 DND1Q8IYX4 353 aaKnown RBP13.93□□□□□ -0.18
CIITA-204ENST00000570546 ANKRD9Q96BM1 317 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms