RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 GLB1L2Q8IW92 636 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 ARHGAP24Q8N264 748 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 ABHD4Q8TB40 342 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 KLF14Q8TD94 323 aaPredicted RBP15.69■□□□□ 0.1
CLN3-214ENST00000565140 C4orf45Q96LM5 186 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 SNX18Q96RF0 628 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 WACQ9BTA9 647 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 GPR160Q9UJ42 338 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 LYVE1Q9Y5Y7 322 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 LOC100289279A0A1B0GTE1 492 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 SGCEO43556 437 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 LMX1BO60663 402 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 HIST1H1CP16403 213 aaKnown RBP15.68■□□□□ 0.1
CLN3-214ENST00000565140 SLC6A6P31641 620 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 MAGEA2P43356 314 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 CHN2P52757 468 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 CCL8P80075 99 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 TRIM25Q14258 630 aaKnown RBP15.68■□□□□ 0.1
CLN3-214ENST00000565140 LCN8Q6JVE9 175 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 TMEM154Q6P9G4 183 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 OR4K13Q8NH42 304 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 GNPDA2Q8TDQ7 276 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 SNX33Q8WV41 574 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 IPCEF1Q8WWN9 437 aaPredicted RBP15.68■□□□□ 0.1
CLN3-214ENST00000565140 NMNAT3Q96T66 252 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 BTBD10Q9BSF8 475 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 IFT27Q9BW83 186 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 CHODLQ9H9P2 273 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 SRA1Q9HD15 236 aaKnown RBP15.68■□□□□ 0.1
CLN3-214ENST00000565140 ZNF275Q9NSD4 429 aaPredicted RBP15.68■□□□□ 0.1
CLN3-214ENST00000565140 ASH2LQ9UBL3 628 aa15.68■□□□□ 0.1
CLN3-214ENST00000565140 IGLV1-36A0A0B4J1U3 117 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 WNT9BO14905 357 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 ARPC3O15145 178 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 DOK2O60496 412 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 RP2O75695 350 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 KRT36O76013 467 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 COX5BP10606 129 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 ACHEP22303 614 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 GCH1P30793 250 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 IFNGR2P38484 337 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 HTR5AP47898 357 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 MMP15P51511 669 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 LSM6P62312 80 aaKnown RBP15.67■□□□□ 0.1
CLN3-214ENST00000565140 SCRN3Q0VDG4 424 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 PPP1R8Q12972 351 aaKnown RBP15.67■□□□□ 0.1
CLN3-214ENST00000565140 TSPAN31Q12999 210 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 AQP6Q13520 282 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 KCNMB1Q16558 191 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 MEP1BQ16820 701 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 CHRFAM7AQ494W8 412 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 CCDC92Q53HC0 331 aaPredicted RBP15.67■□□□□ 0.1
CLN3-214ENST00000565140 MTX3Q5HYI7 312 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 MBNL2Q5VZF2 373 aaKnown RBP15.67■□□□□ 0.1
CLN3-214ENST00000565140 ZNF770Q6IQ21 691 aaPredicted RBP15.67■□□□□ 0.1
CLN3-214ENST00000565140 LEG1Q6P5S2 330 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 DHFR2Q86XF0 187 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 OR6V1Q8N148 313 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 OR9Q2Q8NGE9 314 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 OR4C15Q8NGM1 316 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 SLC7A6Q92536 515 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 CLPTM1LQ96KA5 538 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 MDFIQ99750 246 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 POFUT1Q9H488 388 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 ELOVL3Q9HB03 270 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 TMEM160Q9NX00 188 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 VNN3Q9NY84 501 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 NKIRAS2Q9NYR9 191 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 TAS2R1Q9NYW7 299 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 NDRG4Q9ULP0 352 aaKnown RBP15.67■□□□□ 0.1
CLN3-214ENST00000565140 B9D1Q9UPM9 204 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 TANC2Q9HCD6 1990 aa15.67■□□□□ 0.1
CLN3-214ENST00000565140 TNFRSF11BO00300 401 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 CDC14BO60729 498 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 TGFAP01135 160 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 GAAP10253 952 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 IGFBP5P24593 272 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 CENPAP49450 140 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 MRPS11P82912 194 aaKnown RBP15.66■□□□□ 0.1
CLN3-214ENST00000565140 MOGQ16653 247 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 TSTQ16762 297 aaKnown RBP15.66■□□□□ 0.1
CLN3-214ENST00000565140 PCGF3Q3KNV8 242 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 FAM166AQ6J272 317 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 UNQ6126/PRO20091Q6UXV3 157 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 ZNF620Q6ZNG0 422 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.66■□□□□ 0.1
CLN3-214ENST00000565140 TRIM15Q9C019 465 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 MUC13Q9H3R2 512 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 MAGIXQ9H6Y5 334 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 EGLN3Q9H6Z9 239 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 PLEK2Q9NYT0 353 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 KLHL21Q9UJP4 597 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 CDC42EP3Q9UKI2 254 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 DYSFO75923 2080 aa15.66■□□□□ 0.1
CLN3-214ENST00000565140 OR6C68A6NDL8 312 aa15.65■□□□□ 0.1
CLN3-214ENST00000565140 OR6C6A6NF89 314 aa15.65■□□□□ 0.1
CLN3-214ENST00000565140 RER1O15258 196 aa15.65■□□□□ 0.1
CLN3-214ENST00000565140 ABHD16AO95870 558 aa15.65■□□□□ 0.1
CLN3-214ENST00000565140 GASTP01350 101 aa15.65■□□□□ 0.1
CLN3-214ENST00000565140 CRABP1P29762 137 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms