RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 JAZF1Q86VZ6 243 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 HIPK1Q86Z02 1210 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 GLB1L2Q8IW92 636 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 OR9Q2Q8NGE9 314 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 OR4K13Q8NH42 304 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 RDH5Q92781 318 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 MARS2Q96GW9 593 aaKnown RBP13.39□□□□□ -0.27
VPS39-203ENST00000561797 CLPTM1LQ96KA5 538 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 C4orf45Q96LM5 186 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 SNX18Q96RF0 628 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 WACQ9BTA9 647 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 OR2J1Q9GZK6 312 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 MUC13Q9H3R2 512 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 SRA1Q9HD15 236 aaKnown RBP13.39□□□□□ -0.27
VPS39-203ENST00000561797 TAS2R1Q9NYW7 299 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 NDRG4Q9ULP0 352 aaKnown RBP13.39□□□□□ -0.27
VPS39-203ENST00000561797 LYVE1Q9Y5Y7 322 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 LOC100289279A0A1B0GTE1 492 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 DCTN6O00399 190 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 LILRA1O75019 489 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 RENP00797 406 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 IGHV3-13P01766 116 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 HIST1H1CP16403 213 aaKnown RBP13.38□□□□□ -0.27
VPS39-203ENST00000561797 NOS3P29474 1203 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 CRABP1P29762 137 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 IL2RGP31785 369 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 CHN2P52757 468 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 TSPAN31Q12999 210 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 AQP6Q13520 282 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 MOGQ16653 247 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 TSTQ16762 297 aaKnown RBP13.38□□□□□ -0.27
VPS39-203ENST00000561797 MEP1BQ16820 701 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 LCN8Q6JVE9 175 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 KLF14Q8TD94 323 aaPredicted RBP13.38□□□□□ -0.27
VPS39-203ENST00000561797 IPCEF1Q8WWN9 437 aaPredicted RBP13.38□□□□□ -0.27
VPS39-203ENST00000561797 YIPF5Q969M3 257 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 CCDC124Q96CT7 223 aaKnown RBP13.38□□□□□ -0.27
VPS39-203ENST00000561797 MSI2Q96DH6 328 aaKnown RBP13.38□□□□□ -0.27
VPS39-203ENST00000561797 NMNAT3Q96T66 252 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 SOX7Q9BT81 388 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 FN3KQ9H479 309 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 EGLN3Q9H6Z9 239 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 ELOVL3Q9HB03 270 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 PLEK2Q9NYT0 353 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 ASH2LQ9UBL3 628 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 PRPF19Q9UMS4 504 aaKnown RBP13.38□□□□□ -0.27
VPS39-203ENST00000561797 POLR1DQ9Y2S0 133 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 DYSFO75923 2080 aa13.38□□□□□ -0.27
VPS39-203ENST00000561797 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS39-203ENST00000561797 ARPC3O15145 178 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 TPD52L2O43399 206 aaKnown RBP13.37□□□□□ -0.27
VPS39-203ENST00000561797 LMX1BO60663 402 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 CDC14BO60729 498 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 CCNB2O95067 398 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 ABHD16AO95870 558 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 MT-ND5P03915 603 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 TACSTD2P09758 323 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 COX5BP10606 129 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 ACHEP22303 614 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 GPR6P46095 362 aaPredicted RBP13.37□□□□□ -0.27
VPS39-203ENST00000561797 ARHGDIAP52565 204 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 HMGA2P52926 109 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 LSM6P62312 80 aaKnown RBP13.37□□□□□ -0.27
VPS39-203ENST00000561797 CHRFAM7AQ494W8 412 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 FAM98BQ52LJ0 330 aaKnown RBP13.37□□□□□ -0.27
VPS39-203ENST00000561797 TMEM255AQ5JRV8 349 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 CLEC12AQ5QGZ9 265 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 SLC35F1Q5T1Q4 408 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 FAM166AQ6J272 317 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 DNM1P34Q6PK57 102 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 ARL9Q6T311 187 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 ZNF620Q6ZNG0 422 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 VASH1Q7L8A9 365 aaPredicted RBP13.37□□□□□ -0.27
VPS39-203ENST00000561797 SDR9C7Q8NEX9 313 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 BCAS4Q8TDM0 211 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 SLC7A6Q92536 515 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 LRGUKQ96M69 825 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 BTBD10Q9BSF8 475 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 THTPAQ9BU02 230 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 NARFLQ9H6Q4 476 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 MAGIXQ9H6Y5 334 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 CHODLQ9H9P2 273 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 RPRD1BQ9NQG5 326 aaKnown RBP13.37□□□□□ -0.27
VPS39-203ENST00000561797 ZNF275Q9NSD4 429 aaPredicted RBP13.37□□□□□ -0.27
VPS39-203ENST00000561797 FAM53CQ9NYF3 392 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 B9D1Q9UPM9 204 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 GRIP1Q9Y3R0 1128 aa13.37□□□□□ -0.27
VPS39-203ENST00000561797 IGLV1-36A0A0B4J1U3 117 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 SPRY3O43610 288 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 TGFAP01135 160 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 GASTP01350 101 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 MAGEA2P43356 314 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 ZNF81P51508 661 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 CCNIQ14094 377 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 KCNMB1Q16558 191 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 PCGF3Q3KNV8 242 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 CCDC92Q53HC0 331 aaPredicted RBP13.36□□□□□ -0.27
VPS39-203ENST00000561797 MBNL2Q5VZF2 373 aaKnown RBP13.36□□□□□ -0.27
VPS39-203ENST00000561797 C1orf174Q8IYL3 243 aa13.36□□□□□ -0.27
VPS39-203ENST00000561797 OR6V1Q8N148 313 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms