RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NSMAFQ92636 917 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 HAVCR1Q96D42 359 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 C1QTNF5Q9BXJ0 243 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 UNKLQ9H9P5 680 aaKnown RBP13.81□□□□□ -0.2
CLN3-208ENST00000561505 NDRG4Q9ULP0 352 aaKnown RBP13.81□□□□□ -0.2
CLN3-208ENST00000561505 MED31Q9Y3C7 131 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 MMP24Q9Y5R2 645 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 FXYD1O00168 92 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 FBP2O00757 339 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 PLATP00750 562 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 SCG5P05408 212 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 CD80P33681 288 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 ARHGDIAP52565 204 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 BTG1P62324 171 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 CD47Q08722 323 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 HNRNPA0Q13151 305 aaKnown RBP13.8□□□□□ -0.2
CLN3-208ENST00000561505 NFYCQ13952 458 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 ARMCX4Q5H9R4 360 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 TREML4Q6UXN2 200 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 CLDN22Q8N7P3 220 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 POLE4Q9NR33 117 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 IL20RAQ9UHF4 553 aa13.8□□□□□ -0.2
CLN3-208ENST00000561505 A0A1B0GWJ7 208 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 C12orf71A8MTZ7 269 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 TMEM178BH3BS89 294 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 IFNL4K9M1U5 179 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 AHCYL1O43865 530 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 TNFRSF1BP20333 461 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 MSR1P21757 451 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 TAS2R41P59536 307 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 BAMBIQ13145 260 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 SLC9A3R2Q15599 337 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 METTL21CQ5VZV1 264 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 LEG1Q6P5S2 330 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 OR8J3Q8NGG0 315 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 C10orf82Q8WW14 230 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 UPRTQ96BW1 309 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 ZNF583Q96ND8 569 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 DCLRE1CQ96SD1 692 aaKnown RBP13.79□□□□□ -0.2
CLN3-208ENST00000561505 POFUT1Q9H488 388 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 A4GNTQ9UNA3 340 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 LRCH1Q9Y2L9 728 aa13.79□□□□□ -0.2
CLN3-208ENST00000561505 A6NIZ1 184 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 J3QW42 95 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 TIMM8AO60220 97 aaPredicted RBP13.78□□□□□ -0.2
CLN3-208ENST00000561505 NPPAP01160 153 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 GSTM3P21266 225 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 RBMXP38159 391 aaKnown RBP13.78□□□□□ -0.2
CLN3-208ENST00000561505 MDH2P40926 338 aaKnown RBP13.78□□□□□ -0.2
CLN3-208ENST00000561505 RAP1BP61224 184 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 RAP1AP62834 184 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 CYLC2Q14093 348 aaPredicted RBP13.78□□□□□ -0.2
CLN3-208ENST00000561505 RABL3Q5HYI8 236 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 COQ5Q5HYK3 327 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 PTP4A1Q93096 173 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 SLC25A28Q96A46 364 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 BPIFA2Q96DR5 249 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 SH3GL1Q99961 368 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 MRI1Q9BV20 369 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 GCM1Q9NP62 436 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 PPP1R3CQ9UQK1 317 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 STARD10Q9Y365 291 aa13.78□□□□□ -0.2
CLN3-208ENST00000561505 CMYA5Q8N3K9 4069 aa13.77□□□□□ -0.2
CLN3-208ENST00000561505 SURF4O15260 269 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 PIP5K1CO60331 668 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 RAC2P15153 192 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 FUT4P22083 530 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 TNFSF4P23510 183 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 OR1E2P47887 323 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 CTXN1P60606 82 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 PRKCDQ05655 676 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 ST3GAL3Q11203 375 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 ZNF181Q2M3W8 571 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 MUC20Q8N307 709 aaPredicted RBP13.77□□□□□ -0.21
CLN3-208ENST00000561505 ITLN1Q8WWA0 313 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 COG8Q96MW5 612 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 DUX5Q96PT3 197 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 TMEM165Q9HC07 324 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 ATPIF1Q9UII2 106 aa13.77□□□□□ -0.21
CLN3-208ENST00000561505 OR6C6A6NF89 314 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 CEACAM18A8MTB9 384 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 SHOX2O60902 331 aaPredicted RBP13.76□□□□□ -0.21
CLN3-208ENST00000561505 ABHD16AO95870 558 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 IGHV4-38-2P0DP08 117 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 KDELR2P33947 212 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 GUCA1AP43080 201 aaPredicted RBP13.76□□□□□ -0.21
CLN3-208ENST00000561505 MTNR1AP48039 350 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 SLC9A3P48764 834 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 MMP16P51512 607 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 SCRN3Q0VDG4 424 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 ESCO2Q56NI9 601 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 ERICH5Q6P6B1 374 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 FBXW12Q6X9E4 464 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 ZNF771Q7L3S4 317 aaPredicted RBP13.76□□□□□ -0.21
CLN3-208ENST00000561505 VASH1Q7L8A9 365 aaPredicted RBP13.76□□□□□ -0.21
CLN3-208ENST00000561505 POU5F2Q8N7G0 328 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 PCYOX1LQ8NBM8 494 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 OR2Z1Q8NG97 314 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 OR52E2Q8NGJ4 325 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 CMBLQ96DG6 245 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms