RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 C19orf43Q9BQ61 176 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 TINAGL1Q9GZM7 467 aaPredicted RBP6.48□□□□□ -1.37
USP3-210ENST00000559192 ZBP1Q9H171 429 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 ZFP64Q9NPA5 681 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 DAPP1Q9UN19 280 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 SIGLEC7Q9Y286 467 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 FAM96BQ9Y3D0 163 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 NUP214P35658 2090 aaPredicted RBP6.48□□□□□ -1.37
USP3-210ENST00000559192 MICAL3Q7RTP6 2002 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 GLAP06280 429 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 SNCAP37840 140 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 MEOX2P50222 304 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 RAB38P57729 211 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 HSF1Q00613 529 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 CAMK2DQ13557 499 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 ZNF239Q16600 458 aaKnown RBP6.48□□□□□ -1.37
USP3-210ENST00000559192 GUK1Q16774 197 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 TUSC1Q2TAM9 212 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 EXOSC6Q5RKV6 272 aaKnown RBP6.48□□□□□ -1.37
USP3-210ENST00000559192 LAMTOR1Q6IAA8 161 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 ACOT7LQ6ZUV0 252 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 ZNF695Q8IW36 515 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 LINC01555Q8NAE3 123 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 OR4N2Q8NGD1 307 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 OR5D14Q8NGL3 314 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 HOXB13Q92826 284 aaPredicted RBP6.48□□□□□ -1.37
USP3-210ENST00000559192 ZNF681Q96N22 645 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 TMPRSS5Q9H3S3 457 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 ZNF286AQ9HBT8 521 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 LRIT1Q9P2V4 623 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 PPP5D1E7EU14 171 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 TMEM127O75204 238 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 OR13C7P0DN81 318 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 CTRB1P17538 263 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 RUNX2Q13950 521 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 ADIRFQ15847 76 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 FAM78AQ5JUQ0 283 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 CTRB2Q6GPI1 263 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 MARCH3Q86UD3 253 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 SPICQ8N5J4 248 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 CCDC71LQ8N9Z2 235 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 OR4D10Q8NGI6 311 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 FAM174AQ8TBP5 190 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 TMEM234Q8WY98 164 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 MS4A3Q96HJ5 214 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 STACQ99469 402 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 OR10A5Q9H207 317 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 PRO1933Q9H354 126 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 C11orf49Q9H6J7 331 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 TAF9BQ9HBM6 251 aa6.48□□□□□ -1.37
USP3-210ENST00000559192 RFPL4AA6NLU0 287 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 RFPL4AL1F8VTS6 287 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 CD14P08571 375 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 PI3P19957 117 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 FGF7P21781 194 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 FBLP22087 321 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 FCER1GP30273 86 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 RPL13AP40429 203 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 RANP62826 216 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 DOC2BQ14184 412 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 NSDHLQ15738 373 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SLC36A2Q495M3 483 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 OR2W3Q7Z3T1 314 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SLC25A21Q9BQT8 299 aaPredicted RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 HINT2Q9BX68 163 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 PRDM7Q9NQW5 492 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SLC22A11Q9NSA0 550 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SLCO1C1Q9NYB5 712 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 KCNG2Q9UJ96 466 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 PCDHGA1Q9Y5H4 931 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 DSPPQ9NZW4 1301 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 A0A1W2PPV4 95 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 ANKRD20A5PA0PJZ0 165 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 NPIPB8E9PQR5 432 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 ZNF264O43296 627 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SEC14L5O43304 696 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 XRCC3O43542 346 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 NME2P1O60361 137 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 MPC2O95563 127 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SERPINA5P05154 406 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 NAGAP17050 411 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 HOXB9P17482 250 aaPredicted RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 GALP22466 123 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 CCNOP22674 350 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 DUSP2Q05923 314 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 BAMBIQ13145 260 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SLC17A1Q14916 467 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 ELFN2Q5R3F8 820 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SLC25A30Q5SVS4 291 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 TMEM244Q5VVB8 128 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 MRM1Q6IN84 353 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 FIP1L1Q6UN15 594 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 LRRTM1Q86UE6 522 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 ZNF547Q8IVP9 402 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 FAM181AQ8N9Y4 354 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 LHFPL5Q8TAF8 219 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 NUDCD2Q8WVJ2 157 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 TMEM18Q96B42 140 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 RBMXL1Q96E39 390 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 HDAC8Q9BY41 377 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms